Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G25070 583 / 0 Protein phosphatase 2C family protein (.1) AT4G31860 580 / 0 Protein phosphatase 2C family protein (.1.2) AT2G25620 134 / 2e-35 AtDBP1 DNA-binding protein phosphatase 1 (.1) AT2G33700 132 / 3e-35 Protein phosphatase 2C family protein (.1) AT5G10740 130 / 9e-35 Protein phosphatase 2C family protein (.1) AT5G24940 130 / 7e-34 Protein phosphatase 2C family protein (.1) AT3G51470 128 / 1e-33 Protein phosphatase 2C family protein (.1) AT1G48040 128 / 1e-33 Protein phosphatase 2C family protein (.1) AT1G43900 124 / 2e-32 Protein phosphatase 2C family protein (.1) AT4G31750 122 / 4e-32 WIN2 HOPW1-1-interacting 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042416 [exp] 710 / 0 AT4G31860 610 / 0.0 Protein phosphatase 2C family protein (.1.2) Lus10003423 [exp] 630 / 0 AT4G31860 612 / 0.0 Protein phosphatase 2C family protein (.1.2) Lus10026885 [exp] 603 / 0 AT4G31860 584 / 0.0 Protein phosphatase 2C family protein (.1.2) Lus10026886 [exp] 165 / 4e-46 AT2G44880 376 / 3e-124 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10013124 [exp] 138 / 2e-37 AT2G25620 502 / 7e-179 DNA-binding protein phosphatase 1 (.1) Lus10008091 [exp] 137 / 4e-37 AT2G25620 488 / 1e-173 DNA-binding protein phosphatase 1 (.1) Lus10030731 [exp] 132 / 6e-35 AT2G33700 553 / 0.0 Protein phosphatase 2C family protein (.1) Lus10016030 [exp] 132 / 8e-35 AT2G33700 550 / 0.0 Protein phosphatase 2C family protein (.1) Lus10013213 [exp] 130 / 3e-34 AT2G33700 541 / 0.0 Protein phosphatase 2C family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G265100 [exp] 593 / 0 AT4G31860 606 / 0.0 Protein phosphatase 2C family protein (.1.2) Potri.018G017701 [exp] 591 / 0 AT4G31860 609 / 0.0 Protein phosphatase 2C family protein (.1.2) Potri.001G043000 [exp] 539 / 0 AT4G31860 548 / 0.0 Protein phosphatase 2C family protein (.1.2) Potri.003G183800 [exp] 535 / 0 AT4G31860 547 / 0.0 Protein phosphatase 2C family protein (.1.2) Potri.018G017800 [exp] 256 / 6e-85 AT4G31860 253 / 5e-84 Protein phosphatase 2C family protein (.1.2) Potri.007G058700 [exp] 136 / 1e-36 AT3G51470 502 / 3e-179 Protein phosphatase 2C family protein (.1) Potri.005G102500 [exp] 133 / 2e-35 AT3G51470 496 / 8e-177 Protein phosphatase 2C family protein (.1) Potri.002G007500 [exp] 133 / 3e-35 AT2G33700 560 / 0.0 Protein phosphatase 2C family protein (.1) Potri.018G033000 [exp] 132 / 4e-35 AT2G25620 478 / 3e-169 DNA-binding protein phosphatase 1 (.1) Potri.018G115100 [exp] 131 / 8e-35 AT2G25620 350 / 4e-119 DNA-binding protein phosphatase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0238 [flax] [poplar] PP2C PF00481 [flax] [poplar] PP2C Protein phosphatase 2C
Representative CDS sequence Show only first row Show all	>Lus10026253 pacid=23156382 polypeptide=Lus10026253 locus=Lus10026253.g ID=Lus10026253.BGIv1.0 annot-version=v1.0 ATGGGTGTATACCTCAGTTCTCCCAAAACCGAGAAATTCTCAGAGGATGGAGAAAATGATAAGCTCAGATATGGGTTATCATCCATGCAAGGATGGCGTG CAACCATGGAAGATGCGCATGCTGCTTTGCTGGATTTGGATAGTTCTTCTTCATTCTTTGGTGTCTATGATGGCCATGGAGGTAAAGTGGTCGCCAAATT CTGTGCCAAATATCTTCATCGACAGGTTCTGAAACATGAGGCATATGTAGCTGGCGATGTAGGAACTTCTCTTCAGAAAGCATATTTCAGAATGGATGAG ATGATGCGCGGACAAAGAGGATGGAGAGAGTTGGCTATTTTAGGTGATAAGATTAACAAGTTCTCTGGCATGATTGAAGGGTTTATATGGTCTCCCAGAG CTGGTGAGAATAGTGAACAGCATGATGATTGGGCTTTTGAAGAGGGTCCTCATTCCGACTTTTCTGGACCTACTTCTGGCTGCACCGCTTGCGTAGCGGT AATAAGAAACAAAAAACTTGTTGTAGCAAATGCAGGTGATTCTCGGTGTGTGATATCTCGAAAAGGACAGGCCTACAATTTGTCCATAGATCACAAGCCT GATCTCGAGGTTGAGAAAGAAAGGATTTTAAAAGCAGGTGGTTTCATACATGCTGGGCGTATCAATGGCAGCTTGAATCTTGCTAGAGCTATTGGTGATA TGGAATTCAAACAGAATAAGTTCTTGCCTGCAGAAAAGCAAATTGTGACTGCGGATCCTGATATTAACACTATTGAGCTTTGTGAGGATGATGATTTTTT TGTTCTCGCATGCGATGGAGTATGGGACTGCATGTCAAGCCAGGAACTAGTAGACTTCATTCATGAACAACTGAAATTGGAAACTAAGCTATCTACAGTG TGCGAGAGGGTATTCGATAGGTGTTTAGCACCATCCACAGCTGGGGGAGAGGGATGTGACAATATGACAATGATCTTGGTGCAGTTTAAGAAACCAGCTG AGTCGATTTGCCCTGGGAAGGAGGAGCAAATCTCTGAAGCTGAAGTTTTTGCCAATCCTGTTGCAAATGAGTCGACTGCTAGACCTGAAGGAAGTGAATG A
AA sequence Show only first row Show all	>Lus10026253 pacid=23156382 polypeptide=Lus10026253 locus=Lus10026253.g ID=Lus10026253.BGIv1.0 annot-version=v1.0 MGVYLSSPKTEKFSEDGENDKLRYGLSSMQGWRATMEDAHAALLDLDSSSSFFGVYDGHGGKVVAKFCAKYLHRQVLKHEAYVAGDVGTSLQKAYFRMDE MMRGQRGWRELAILGDKINKFSGMIEGFIWSPRAGENSEQHDDWAFEEGPHSDFSGPTSGCTACVAVIRNKKLVVANAGDSRCVISRKGQAYNLSIDHKP DLEVEKERILKAGGFIHAGRINGSLNLARAIGDMEFKQNKFLPAEKQIVTADPDINTIELCEDDDFFVLACDGVWDCMSSQELVDFIHEQLKLETKLSTV CERVFDRCLAPSTAGGEGCDNMTMILVQFKKPAESICPGKEEQISEAEVFANPVANESTARPEGSE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G25070			Protein phosphatase 2C family ...		Lus10026253 [exp]	0	1
AT5G15460		MUB2	membrane-anchored ubiquitin-fo...		Lus10030704 [exp]	2.4	0.8891
AT1G26670		VTI1B, ATVTI12,...	VESICAL TRANSPORT V-SNARE 12, ...		Lus10037141 [exp]	3.7	0.8964
AT2G44610		RAB6, AtRABH1b,...	Ras-related small GTP-binding ...		Lus10019501 [exp]	6.6	0.8427
AT1G72510			Protein of unknown function (D...		Lus10037683 [exp]	9.5	0.8617
AT4G07390			Mannose-P-dolichol utilization...		Lus10021350 [exp]	10.5	0.8466
AT5G45130		ATRAB-F2A, RHA1...	ARABIDOPSIS RAB HOMOLOG F2A, R...		Lus10036196 [exp]	11.3	0.8664
AT4G28880		CKL3	casein kinase I-like 3 (.1)		Lus10043233 [exp]	17.5	0.8364
AT3G22190		IQD5	IQ-domain 5 (.1.2)		Lus10004107 [exp]	17.9	0.8075
AT3G02740			Eukaryotic aspartyl protease f...		Lus10036430 [exp]	18.0	0.8309
AT5G45130		ATRAB-F2A, RHA1...	ARABIDOPSIS RAB HOMOLOG F2A, R...		Lus10038334 [exp]	18.6	0.8647

Compare expression of checked genes

Lus10026253 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.