Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G31820 543 / 0 MAB4, ENP, NPY1 NAKED PINS IN YUC MUTANTS 1, MACCHI-BOU 4, ENHANCER OF PINOID, Phototropic-responsive NPH3 family protein (.1) AT2G14820 442 / 3e-143 MEL3, NPY2 NAKED PINS IN YUC MUTANTS 2, MAB4/ENP/NPY1-LIKE 3, Phototropic-responsive NPH3 family protein (.1) AT4G37590 430 / 3e-139 MEL1, NPY5 NAKED PINS IN YUC MUTANTS 5, MAB4/ENP/NPY1-LIKE 1, Phototropic-responsive NPH3 family protein (.1) AT5G67440 426 / 1e-137 MEL2, NPY3 NAKED PINS IN YUC MUTANTS 3, MAB4/ENP/NPY1-LIKE 2, Phototropic-responsive NPH3 family protein (.1.2) AT2G23050 420 / 8e-137 MEL4, NPY4 NAKED PINS IN YUC MUTANTS 4, MAB4/ENP/NPY1-LIKE 4, Phototropic-responsive NPH3 family protein (.1) AT1G67900 378 / 9e-119 Phototropic-responsive NPH3 family protein (.1.2.3) AT3G26490 327 / 4e-100 Phototropic-responsive NPH3 family protein (.1) AT5G47800 320 / 6e-98 Phototropic-responsive NPH3 family protein (.1) AT5G03250 297 / 4e-89 Phototropic-responsive NPH3 family protein (.1) AT1G30440 288 / 7e-85 Phototropic-responsive NPH3 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042414 [exp] 1025 / 0 AT4G31820 612 / 0.0 NAKED PINS IN YUC MUTANTS 1, MACCHI-BOU 4, ENHANCER OF PINOID, Phototropic-responsive NPH3 family protein (.1) Lus10014632 [exp] 480 / 7e-158 AT2G14820 741 / 0.0 NAKED PINS IN YUC MUTANTS 2, MAB4/ENP/NPY1-LIKE 3, Phototropic-responsive NPH3 family protein (.1) Lus10033796 [exp] 479 / 1e-157 AT2G14820 735 / 0.0 NAKED PINS IN YUC MUTANTS 2, MAB4/ENP/NPY1-LIKE 3, Phototropic-responsive NPH3 family protein (.1) Lus10011525 [exp] 458 / 4e-150 AT4G37590 579 / 0.0 NAKED PINS IN YUC MUTANTS 5, MAB4/ENP/NPY1-LIKE 1, Phototropic-responsive NPH3 family protein (.1) Lus10019297 [exp] 449 / 8e-147 AT4G37590 569 / 0.0 NAKED PINS IN YUC MUTANTS 5, MAB4/ENP/NPY1-LIKE 1, Phototropic-responsive NPH3 family protein (.1) Lus10000443 [exp] 384 / 7e-121 AT1G67900 797 / 0.0 Phototropic-responsive NPH3 family protein (.1.2.3) Lus10038763 [exp] 359 / 2e-112 AT5G47800 612 / 0.0 Phototropic-responsive NPH3 family protein (.1) Lus10039099 [exp] 357 / 4e-111 AT5G47800 655 / 0.0 Phototropic-responsive NPH3 family protein (.1) Lus10025193 [exp] 291 / 8e-92 AT5G67440 298 / 9e-99 NAKED PINS IN YUC MUTANTS 3, MAB4/ENP/NPY1-LIKE 2, Phototropic-responsive NPH3 family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G018600 [exp] 695 / 0 AT4G31820 630 / 0.0 NAKED PINS IN YUC MUTANTS 1, MACCHI-BOU 4, ENHANCER OF PINOID, Phototropic-responsive NPH3 family protein (.1) Potri.006G264300 [exp] 648 / 0 AT4G31820 623 / 0.0 NAKED PINS IN YUC MUTANTS 1, MACCHI-BOU 4, ENHANCER OF PINOID, Phototropic-responsive NPH3 family protein (.1) Potri.001G295600 [exp] 504 / 2e-167 AT2G14820 771 / 0.0 NAKED PINS IN YUC MUTANTS 2, MAB4/ENP/NPY1-LIKE 3, Phototropic-responsive NPH3 family protein (.1) Potri.009G089500 [exp] 493 / 5e-163 AT2G14820 732 / 0.0 NAKED PINS IN YUC MUTANTS 2, MAB4/ENP/NPY1-LIKE 3, Phototropic-responsive NPH3 family protein (.1) Potri.005G146400 [exp] 471 / 1e-154 AT2G14820 671 / 0.0 NAKED PINS IN YUC MUTANTS 2, MAB4/ENP/NPY1-LIKE 3, Phototropic-responsive NPH3 family protein (.1) Potri.008G186100 [exp] 400 / 2e-127 AT1G67900 833 / 0.0 Phototropic-responsive NPH3 family protein (.1.2.3) Potri.010G046800 [exp] 394 / 5e-125 AT1G67900 861 / 0.0 Phototropic-responsive NPH3 family protein (.1.2.3) Potri.016G003700 [exp] 363 / 1e-113 AT5G47800 705 / 0.0 Phototropic-responsive NPH3 family protein (.1) Potri.006G003000 [exp] 353 / 2e-110 AT5G47800 692 / 0.0 Phototropic-responsive NPH3 family protein (.1) Potri.017G048200 [exp] 322 / 3e-97 AT5G64330 993 / 0.0 ROOT PHOTOTROPISM 3, NON-PHOTOTROPIC HYPOCOTYL 3, Phototropic-responsive NPH3 family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0033 [flax] [poplar] POZ PF00651 [flax] [poplar] BTB BTB/POZ domain CL0033 [flax] [poplar] PF03000 [flax] [poplar] NPH3 NPH3 family
Representative CDS sequence Show only first row Show all	>Lus10026255 pacid=23156605 polypeptide=Lus10026255 locus=Lus10026255.g ID=Lus10026255.BGIv1.0 annot-version=v1.0 ATGAAGTTTATGAAGTTAGGGTCCAAGCCGGATGTCTTTCAGGCCGAAGGAAAATCCACCAGGTATGTTCCATCCGAGCTGGCTACAGATGTCCACATTA ATGTTGGTGAAGTTAAATTTTACCTCCACAAGTTCCCTCTCCTGTCGAAGAGCAGCCGATTGCAGAAACTAGTGGCGAAAGCGCCTGAAGAGAGCTCTGA TGAGATTGACATTATCGATTTTCCCGGTGGACACAAGGCCTTTGAAATATGTGCTAAATTCTGCTACGGAATGACAGTCACTCTCAACGCATACAATGTC GTAGCTGCTCGATGTGCAGCTGAGTACCTTGAGATGACTGAGGATGTCGATTCAGGGAACCTGATTTTCAAGATTGAGGTGTTCCTCAACTCGAGCATTT TCCGGAGCTGGAAAGATTCTATCATTGTTCTTCAGACCACCAAGGCTCTATTGCCCTGGTCTGATGAGTTGAAGATTGTTGGGAGATGCATTGATTCCAT TGCATCCAAGACTTCCATTGACCCTTCCACTATCACTTGGTCTTATACTTACAATAGGAAGCTGAATGATGCAGACAATGAGATACTACTAGAAGATGAT GATGACGTGCATCGCAAGTTTCGAAAGAGAAACGGTCATCATCATGGTGTTCCAAAGGATTGGTGGGTTGAAGATGCATGTGAGCTGGAAATTGACCTCT ACAAGAGAGTAATTCTTGCTGTCAAATCGAAGGGTAGAATGGACTGTATGGTGATGGGAGAGGCTCTTAAATGTTATGCTCTTCGATGGCTTCCTGATTC CTTAGATGACTTGACTTGCGACGCAAGTAACTCGTGGCATAAGTATCTGGTGGAAACACTAATCCATCTTCTGCCCGCTGAAAAGGCTGGTGGTGGCTGT TCTTGTAGTTTCTTACTCAAATTGTTGAAAGTCGCCATCTTTGCTGGAGTTAATGATACCCTCAAGGAAGATCTAGTGAAGAGGGCTGGTCTGAAGTTGC AGGAGGCTTCTGTTGAGGATCTGTTGATCCCGGCACAGTCGCCTCAGTCTACTACAAAGTACGATGTTGAGTTGGTGAAGAGCCTTGTCAATGAATTCCT GACGAACGAAAAGCATTTTGAGGAGTCGAGCATTGAGAAGAATGGTGGGGAAGTAGAAAGATTCCTTTTCCCACCTGAGCATAGGTCCTTGATGCATGTT GGCCAACTGATTGATGGCTACCTGGCTGAGATTGCTCATGATGCCAATGAGCATCCAGGGTTGAGTAAGGTTGAAAGAAAGAAGATGTGCAGCATGTTGG ATGTTAAGAAGCTGACAATGAATGCTTCAATGCACGCAGCACAAAATGAGAGTCTCCCGCTTCGTTTGGTTGTACAAGTTCTCTTCTTTGAGCAGGTCAG AGCAGCAGCAGCAGCAGCTAATGGTCAAAGCCTCAACCACAACCTGAATTACACTTCGAATGCGACGAAAAACACAGAGGAAGGTTGCGAAGTCCTGGAG AAGCAAATGAGCGTGAAATTGAAGGTAGCAACTGTTGAGGCTGAGGAGGAGGAAGAGGAGGAGCAGAGGAATATGAGGCTGATGAAGAAAAACAGCAGCA AGAATAGCAAAAGTGGATTGCAGTTGCTACCATCTCGTTCAAGGAGAATATTTGACAAGTTGTGGGGTGTTGGGAGGGGAGGGCATGTAGTAGAGAGCAA GAGCTCTGAGACATCTGGCAGCTCAGAGCTGAATGTGCATTCATTCATTGTCCTTTATTTGGTGGATATATTAAATTTTGCTACCTCTTTTTCTGGAAAT TATGACACGTGTGCTCTTCTTACATGTAGGTATGTTCCATCCGAGCTGGCTACAGATGTCACCATTAATGTTGGTGAAGTTAAATTTTACCTCCACAAGT TAGGACACAAGGCCTTTGAAATATGTGCTAAATTCTGCTACGGAATGACAGTCACTCTCAACGCATACAATGTCGTAGCTGCTCGATGTGCAGCTGAGTA CCTTGAGATGACTGAGGATGTCGATTCAGGGAACCTGATTTTCAAGATTGAGGTGTTCCTCAACTCGAGCATTTTCCGGAGCTGGAAAGATTCTATCATT GTTCTTCAGACCACCAAGGCTCTATTGCCCTGGTCTGATGAGTTGAAGATTGTTGGGAGATGCATTGATTCCATTGCATCCAAGACTTCCATTGACCCTT CCACTATCACTTGGTCTTATACTTACAATAGGAAGCTGAATGATGCAGACAATGAGATACTACTAGAAGATGATGATGACGTGCATCGCAAGTTTCGAAA GAGAAACGGTCATCATCATGGTGTTCCAAAGGATTGGTGGGTTGAAGATGCATGTGAGCTGGAAATTGACCTCTACAAGAGAGTAATTCTTGCTGTCAAA TCGAAGGGTAGAATGGACTGTATGGTGATGGGAGAGGCTCTTAAATGTTATGCTCTTCGATGGCTTCCTGATTCCTTAGATGACTTGACTTGCGACGCAA GTAACTCGTGGCATAAGTATCTGGTGGAAACACTAATCCATCTTCTGCCCGCTGAAAAGGCTGGTGGTGGCTGTTCTTGTAGTTTCTTACTCAAATTGTT GAAAGTCGCCATCTTTGCTGGAGTTAATGATACCCTCAAGGAAGATCTAGTGAAGAGGGCTGGTCTGAAGTTGCAGGAGGCTTCTGTTGAGGATCTGTTG ATCCCGGCACAGTCGCCTCAGTCTACTACAAAGTACGATGTTGAGTTGGTGAAGAGCCTTGTCAATGAATTCCTGACGAACGAAAAGCATTTTGAGGAGT CGAGCATTGAGAAGAATGGTGGGGAAGTAGAAAGATTCCTTTTCCCACCTGAGCATAGGTCCTTGATGCATGTTGGCCAACTGATTGATGGCTACCTGGC TGAGATTGCTCATGATGCCAATGTTGGCCTCGAAAGCTTCATGGACCTTTCTCGATCTGTTCCGGAGCCTGCAAGGCCGATTCATGATGGTCTTTACATG GCGATTGACATCTACCTCAAGGCAAGCTAA
AA sequence Show only first row Show all	>Lus10026255 pacid=23156605 polypeptide=Lus10026255 locus=Lus10026255.g ID=Lus10026255.BGIv1.0 annot-version=v1.0 MKFMKLGSKPDVFQAEGKSTRYVPSELATDVHINVGEVKFYLHKFPLLSKSSRLQKLVAKAPEESSDEIDIIDFPGGHKAFEICAKFCYGMTVTLNAYNV VAARCAAEYLEMTEDVDSGNLIFKIEVFLNSSIFRSWKDSIIVLQTTKALLPWSDELKIVGRCIDSIASKTSIDPSTITWSYTYNRKLNDADNEILLEDD DDVHRKFRKRNGHHHGVPKDWWVEDACELEIDLYKRVILAVKSKGRMDCMVMGEALKCYALRWLPDSLDDLTCDASNSWHKYLVETLIHLLPAEKAGGGC SCSFLLKLLKVAIFAGVNDTLKEDLVKRAGLKLQEASVEDLLIPAQSPQSTTKYDVELVKSLVNEFLTNEKHFEESSIEKNGGEVERFLFPPEHRSLMHV GQLIDGYLAEIAHDANEHPGLSKVERKKMCSMLDVKKLTMNASMHAAQNESLPLRLVVQVLFFEQVRAAAAAANGQSLNHNLNYTSNATKNTEEGCEVLE KQMSVKLKVATVEAEEEEEEEQRNMRLMKKNSSKNSKSGLQLLPSRSRRIFDKLWGVGRGGHVVESKSSETSGSSELNVHSFIVLYLVDILNFATSFSGN YDTCALLTCRYVPSELATDVTINVGEVKFYLHKLGHKAFEICAKFCYGMTVTLNAYNVVAARCAAEYLEMTEDVDSGNLIFKIEVFLNSSIFRSWKDSII VLQTTKALLPWSDELKIVGRCIDSIASKTSIDPSTITWSYTYNRKLNDADNEILLEDDDDVHRKFRKRNGHHHGVPKDWWVEDACELEIDLYKRVILAVK SKGRMDCMVMGEALKCYALRWLPDSLDDLTCDASNSWHKYLVETLIHLLPAEKAGGGCSCSFLLKLLKVAIFAGVNDTLKEDLVKRAGLKLQEASVEDLL IPAQSPQSTTKYDVELVKSLVNEFLTNEKHFEESSIEKNGGEVERFLFPPEHRSLMHVGQLIDGYLAEIAHDANVGLESFMDLSRSVPEPARPIHDGLYM AIDIYLKAS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G31820		MAB4, ENP, NPY1	NAKED PINS IN YUC MUTANTS 1, M...		Lus10026255 [exp]	0	1
AT4G31820		MAB4, ENP, NPY1	NAKED PINS IN YUC MUTANTS 1, M...		Lus10026256 [exp]	1.0	0.9811
AT1G22100			Inositol-pentakisphosphate 2-k...		Lus10010640 [exp]	6.0	0.8962
AT2G28305		ATLOG1	LONELY GUY 1, Putative lysine ...		Lus10019712 [exp]	8.2	0.8758
AT3G14690		CYP72A15	"cytochrome P450, family 72, s...		Lus10042487 [exp]	8.8	0.9014
AT2G29420		GST25, ATGSTU7	GLUTATHIONE S-TRANSFERASE 25, ...		Lus10016471 [exp]	10.6	0.9169
AT4G02860			Phenazine biosynthesis PhzC/Ph...		Lus10003725 [exp]	11.2	0.8882
AT5G03380			Heavy metal transport/detoxifi...		Lus10021516 [exp]	13.5	0.8803
AT5G59590		UGT76E2	UDP-glucosyl transferase 76E2 ...		Lus10016460 [exp]	14.1	0.8924
AT5G23190		CYP86B1	"cytochrome P450, family 86, s...		Lus10040986 [exp]	16.9	0.7982
AT1G09050			unknown protein		Lus10037506 [exp]	23.9	0.8786

Compare expression of checked genes

Lus10026255 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.