Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042412 [exp] 310 / 2e-108 ND / Lus10026258 [exp] 308 / 3e-107 ND / Lus10026194 [exp] 231 / 4e-77 ND / Lus10042413 [exp] 234 / 7e-76 ND / Lus10042472 [exp] 226 / 3e-75 ND / Lus10042473 [exp] 211 / 1e-67 ND / Lus10034839 [exp] 198 / 6e-64 ND / Lus10011163 [exp] 182 / 1e-57 ND / Lus10043068 [exp] 181 / 2e-57 ND /
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G002400 [exp] 248 / 1e-83 ND / Potri.001G307000 [exp] 215 / 1e-70 ND / Potri.001G307100 [exp] 202 / 6e-66 ND / Potri.001G306932 [exp] 184 / 1e-58 ND / Potri.005G193200 [exp] 179 / 2e-56 ND / Potri.002G067000 [exp] 176 / 2e-55 ND /
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0004 [flax] [poplar] Concanavalin PF08787 [flax] [poplar] Alginate_lyase2 Alginate lyase
Representative CDS sequence Show only first row Show all	>Lus10026257 pacid=23156447 polypeptide=Lus10026257 locus=Lus10026257.g ID=Lus10026257.BGIv1.0 annot-version=v1.0 ATGGGGAACCTAAAGAGTTCAGTAGTAGTAGCGTTTCAATTACTGCAGATGACGATCCAATTATCATCATCATCAGCTGCTAGTGCTAGTGTTATTCCCA GAACAGGATTCGTATCCCAGCCTTTCAATCACTCCATGTACCACATCCAAAGCCCTTACAACTTACCAGAAAGCAAACGTTACAGCTTCGTCGATGGAGT TCACAAGTGTTGGGTTTACTCCACTGACCTACCTCATTCCCGCACCAGTCATACCAAGCCTAGAACCGAGGTGGCCATTCAGGGATACAAGTACAAGTCA GGTGTTTGGCAATTCGAAGGGTACGTTTACGTGCCGAGTGGGACTTCAGGGGTGAATATTATGCAAGTGTTTGGAGCAAGGCCTCCGGGAGCTACTTCGT TGATGCTCATGGTCTACGATGGCTCCCTCCATTACTACAGCAAGGGTCAAGTTCTGTTTTCGAACTTGTACGATAAGTGGTTTAAGCTAAACGTGATTGA TGATTTTGATTCCCACAAAATTAATGTCTACATCAATGACGAGCTCAAATTGGAGGTCCAAGGGCATGGTGGAAAATCCCACTTTTTCAAATTTGGTGTC TATGCTCATCGAGGTGACTCTCATCTTATGGAGTCTCATTGGAAAAATATACGAATTTCAAAGAAAGTTTAG
AA sequence Show only first row Show all	>Lus10026257 pacid=23156447 polypeptide=Lus10026257 locus=Lus10026257.g ID=Lus10026257.BGIv1.0 annot-version=v1.0 MGNLKSSVVVAFQLLQMTIQLSSSSAASASVIPRTGFVSQPFNHSMYHIQSPYNLPESKRYSFVDGVHKCWVYSTDLPHSRTSHTKPRTEVAIQGYKYKS GVWQFEGYVYVPSGTSGVNIMQVFGARPPGATSLMLMVYDGSLHYYSKGQVLFSNLYDKWFKLNVIDDFDSHKINVYINDELKLEVQGHGGKSHFFKFGV YAHRGDSHLMESHWKNIRISKKV

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10026257 [exp]	0	1

Compare expression of checked genes

Lus10026257 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.