Plant FIBer expression Database

Lus10026259 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10042411
[exp]
330 / 2e-113 AT1G48120 56 / 2e-08 hydrolases;protein serine/threonine phosphatases (.1)
Poplar homologues

No hit found
PFAM info
Representative CDS sequence
>Lus10026259 pacid=23156531 polypeptide=Lus10026259 locus=Lus10026259.g ID=Lus10026259.BGIv1.0 annot-version=v1.0
ATGGCTTCTCCAAGTTGTTATCTTTTTCCCTGTAGAAACCAGCAGAAGCAGCCCAAAGGGATGGTGGTGGTTGCACTGATGGCTTTTTGGATCCGGGGCC
AATCGACAAATCGATTCTTGTGCTGCAGGACCAGCATAGATCTGAAGCAATATGGAATGGACAAGTGGAGGTCTCCCGTGATTCGTAGAGATAATCCGAT
CAGGGCATTATTTCTATATCGAGATCAAATTGATCAACTAACAGAAGACCAGGTACAGAGCTTGACAAACATTCATTCCCGGTGCACCGCTGCTCTAAAC
TCTACTTCAAGTGGCGAGGCGTTGCCAACTTTGCATGAGATTCAGTCGGTGTGCAACCGGGTATTGGAGTTGATCGGTGAGACTCGTCATCTCCAGAAAA
CACCGACATCGGTTCCAGTTGGGGAGACAGCTATATTCACAATGTCACCATTTCCAGAAGCTATGGACGGAGATTTACAGCCTAATTATGAGAAACCTGC
TGCTATTTCGCACCAAACTTCGGTAGAAGCTAGATCGAAGAATCTGGCTATTAAAAGGCGAGGGAATAGCAAAGATGATCATCATAGCCAGGCAGGAGGA
ACGGTAACAGGGAGACTACCCCAGGTTGAGGATGAAGTTAATGAATTAGAGTGCGTTAGTTCAGAGGAGTGTCCAGCAAGCAACCTCCTACCGGAGGGGG
AGATAGTGGCGGAGTCAACGGTAGACATTGACTCAATTCGGAAGAAGTCACAAGAAACTCAATGTGATGAGACTTGTAGCCCACGGAAGAAGAAGAAGAA
ACAGTCTGCAAATTGCGATGATGAAACGTTGTAG
AA sequence
>Lus10026259 pacid=23156531 polypeptide=Lus10026259 locus=Lus10026259.g ID=Lus10026259.BGIv1.0 annot-version=v1.0
MASPSCYLFPCRNQQKQPKGMVVVALMAFWIRGQSTNRFLCCRTSIDLKQYGMDKWRSPVIRRDNPIRALFLYRDQIDQLTEDQVQSLTNIHSRCTAALN
STSSGEALPTLHEIQSVCNRVLELIGETRHLQKTPTSVPVGETAIFTMSPFPEAMDGDLQPNYEKPAAISHQTSVEARSKNLAIKRRGNSKDDHHSQAGG
TVTGRLPQVEDEVNELECVSSEECPASNLLPEGEIVAESTVDIDSIRKKSQETQCDETCSPRKKKKKQSANCDDETL

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
Lus10026259
[exp]
0 1
AT3G51740 IMK2 inflorescence meristem recepto... Lus10022678
[exp]
6.1 0.8052
AT3G19650 cyclin-related (.1) Lus10011420
[exp]
10.8 0.7573
AT4G32520 AtSHMT3, SHM3 serine hydroxymethyltransferas... Lus10022391
[exp]
11.0 0.7338
AT5G43822 Pentatricopeptide repeat (PPR)... Lus10030735
[exp]
11.2 0.7389
Lus10011613
[exp]
13.6 0.6835
AT5G57120 unknown protein Lus10001434
[exp]
14.5 0.7603
AT3G48425 DNAse I-like superfamily prote... Lus10019483
[exp]
20.1 0.7350
AT3G16260 TRZ4 tRNAse Z4 (.1) Lus10038290
[exp]
23.7 0.7652
AT2G02160 C3HZnF CCCH-type zinc finger family p... Lus10014490
[exp]
23.8 0.6913
AT5G64320 Pentatricopeptide repeat (PPR)... Lus10038804
[exp]
29.8 0.7419

Lus10026259 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.