Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G02560 1889 / 0 TIP120, HVE, ETA2, ATCAND1, CAND1 HEMIVENATA, CULLIN-ASSOCIATED AND NEDDYLATION DISSOCIATED 1, cullin-associated and neddylation dissociated (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042409 [exp] 2325 / 0 AT2G02560 1949 / 0.0 HEMIVENATA, CULLIN-ASSOCIATED AND NEDDYLATION DISSOCIATED 1, cullin-associated and neddylation dissociated (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G000500 [exp] 2071 / 0 AT2G02560 1940 / 0.0 HEMIVENATA, CULLIN-ASSOCIATED AND NEDDYLATION DISSOCIATED 1, cullin-associated and neddylation dissociated (.1.2) Potri.004G229300 [exp] 2047 / 0 AT2G02560 1913 / 0.0 HEMIVENATA, CULLIN-ASSOCIATED AND NEDDYLATION DISSOCIATED 1, cullin-associated and neddylation dissociated (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF08623 [flax] [poplar] TIP120 TATA-binding protein interacting (TIP20) CL0020 [flax] [poplar] TPR PF02985 [flax] [poplar] HEAT HEAT repeat
Representative CDS sequence Show only first row Show all	>Lus10026261 pacid=23156484 polypeptide=Lus10026261 locus=Lus10026261.g ID=Lus10026261.BGIv1.0 annot-version=v1.0 ATGGCGAACTTGCAATTGACTGGTATCCTGGAGAAGATGACCGGAAAAGACAAAGACTATAGATACATGGCTACTTCGGATCTGTTGAATGAGTTGAATA AGGAGGGATTCAAAGCTGATGGTGAAATGGAGACTAAATTGTCGAATATTGTCCTCCAGCAACTCGATGATGTTGCTGGTGATGTTTCTGGATTGGCGGT CAAATGTCTTGCCCCACTGGTGAAGAAAGTGAATGATGCACGGGTAGTTGAGATGACTGGCAAACTATGTGATAAGTTGCTAAATTGTAAAGATCAACAT CGTGACATTGCAAGCATAGCTTTGAAGACTATTATAGCTGAAGTCACTACTCAATCTCTTGCTCAATCAGTTCTTGTTGCTTTGACTCCACAATTGACAA GAGGAATAACTAGTCCAGGGATGGTCACAGAGATAAAATGTGAATGTCTGGATATTTTGTGCGAAGTCCTCCACAAATTTGGAAATCTAATGGGAACAGA CCATGAATTACTCCTTGGTGCTCTTTTGTCCCAATTAAACTTTAGCCAAGCAAGTGTTAGAAAGAAGTCTGTTTCATGTCTCGCTTCTCTGGCTGCAAGT TTGTCTGATGACCTGTTGGCCAAGGCAACTGTTGAAGTTGTTCAGAAATTGAGAAGCAAGGGGGTGAAGCCTGAAATGACCAGAACTAATATTCAAATGA TTGGTGCTCTCAGCCGTGCTGTGGGATACCGCTTTGGACCCCATCTTGAAGATACCGTTCCTTTGCTTATTAATTACTGCACTAGTGCATCTGAGAATGA TGAGGAGCTCCGTGAATATAGCTTACAGGCGTTAGAAAGTTTTCTGCTTAGATGCCCGCGAGACATTTCTTCGTATTGCGACGTTATTCTTCGTCTTGCT TTGGAGTACCTAAGCTACGATCCCAACTATACTGATAACATGGAGGAGGATACTGATGACGAGATCCATGAAGAAGAGGAAGATGATGAAAGTGCAAATG AATATACTGATGATGAGGATGTTAGTTGGAAAGTTCGAAGGGCAGCTGCTAAATGTTTGGCTGCATTGATTGTTTCTCGTCCTGAGCTACTGGCGAACCT ATATGAGGAGGCATGTCCAAAAATAATTGATAGATTCAAAGAGAGGGAAGAGAATGTGAAGATGGACGTCTTTAATACATTCATAGAGCTTCTACGCCAG ACTGGAAATGTGACAAAAGGGCAGACTGACATGGACGAAACAAGGCAAGTTTTTTGGTTGGAGTTTGCTCCGAATGGCACAAATTGTTCTCTTATGCCGT CAATGCTTTACTTTGCGAGATGGCTATTGAAGCAAGAAGTCCCAAAGATTGTGAAGTCTATAAATAGACAGTTGCGTGAGAAATCTATCAAGACAAAGGT GGGTGCCTTTTCAGTTTTGAAAGAATTGGTGATTGTTTTGCCAGATTGTCTAGCAGAGCAAATTGGATCACTCATTCCAGGAATTGAAAAAGCACTAAAT GACAAATCTTCCACCTCAAATTTGAAGATTGAAGCCCTTGTGTTTACAAGATTAGTGTTGGCTTCTCACTCACCACCAGTGTTCCATCCTTTTATCAAGG CTCTTTCTAGTCCTATTTTATCTGCTGTTGGTGAACGGTATTACAAGGTTACAGCTGAGGCTTTAAGAGTATGTGGGGAACTTGTTCGTGTTCTGAGGCC AAATATTCAGGACCACTCATTTGACTTCCAACCGTATGTTCATCCAATATATAAAGCGATTATGTCTCGTCTGACAAACCAAGATCAAGACCAGGAGGTC AAAGAGTGCGCTATTTCTTGCATGGGACTTGTCATCTCCAGATTTGGCGATTGCCTAAGAGCTGAATTATCTTCTTGCTTACCTGTTCTTGTGGACAGGA TGGGTAACGAGATCACTAGGCTCACTGCCGTAAAGGCATTTGCAGTCATTGCTACTTCTCCTCTACGGATTGATCTAGCATGTGTCTTGGAGCACGTGAT TGGAGAGTTGACTGCATTTCTGCGGAAGGCCAACAGGGCGCTGAGACAGGCAACTCTAGCAACTCTAAATTCTCTGGTGGTTGCTTATGGTGATATGATT GGTGCATCTGCTTATGAAGTTATAATTGTGGAGCTTTCAACATTGATAAGTGATTTAGACTTGCACATGACGGCGCTTGCTCTTGAACTATGCTGCACAT TAATGGCTGACAGCAGGTCAAGCCGAAGTATAGACTTGGCTGTGAGAAATAAAGTTCTTCCTCAAGCATTGGCGTTGATCAAAAGTTCGTTGCTACAGGG TCAAGCCCTCATGGCTCTTCAGAACTTTTTTGCTGCTTTGGTTTATTCGGTGAATACCAGCTTCGATGCTTTATTGGACTCGCTTCTCTCTTGTGCCAAA CCAACCCCTCAGTCTGGTGGTATTGCAAAACAGGCATTGCATGAAATAGGCCAGTGTGTGGCAGTTCTCTGCCTCGCTGCAGGTGATCAGAAATGTTCAT CAACAGTTCGGATGCTTACAGAGATTCTCAAAGATGATAGCAGCACTAATTCTGCTAAGAAGCACCTCGCCTTGTTGTGCTTGGGGGAAATTGGGAGAAG GAAAGATTTAAGTGCTCATGCACATATCGAAACTATCATTATCGAGTCTTTCCAGTCTCCTTTTGAGGAGATTAAGGCTGCTGCTTCCTATGCTCTGGGA AATATTGCCGTTGGCAATTTGTCGAAGTATTTACCTTTTATCTTGGACCAGATTGATAATCAGCAGAAGAAACAATATCTTTTGCTTCATTCTTTGAAAG AGGTTATAGTGAGGCAATCAGTCGATAGGGCTGAGTTCCAGGATTCTAGCGTGGAAAAGATACTTAAGCTACTATTTAATCATTGTGAAAGCGAGGAAGA GGGTGTCCGAAATGTTGTAGCTGAATGCTTAGGCAAAATTGCTCTAATTGAACCAGTAAAACTCATCCCTGCGCTCAAGGTAAGAACAACTAGTCCGGCT GCTTTTACAAGAGCAACCGTGGTGATCGCTGTCAAATATTCTATAGTTGAGAGGACTGAGAAGATAGATGAGATTATCTTCTCCGAGATATCGTCGTTTC TAATGCTCATCAAAGATGTTGACCGGCATGTTAGGCGTGCAGCTGTGTTGGCCTTGAGTACATTTGCTCACAATAAGCCCAACCTGATTAAAGGAATTTT ACCGGAACTGTTGCCACTTCTCTATGATCAGACAGTAGTCAAGAAAGAATTGATACGAACTGTTGACCTTGGGCCTTTCAAGCACATTGTGGACGATGGA TTAGAGTTGAGGAAAGCTGCTTTTGAGTGTGTGGATACACTGTTAGACAGCTGTCTTGATCAAGTGAATCCGTCATCCTTCATAATCCCACACCTGAAAT CTGGGCTGGAAGATCATTATGATGTAAAAATGCCTTGCCACCTAATTCTATCAAAACTAGCGGATAAATGTCCATCTGCTGTGCTGGCAGTACTGGATTC ACTGGTTGACCCTCTTCAAAAAACCATCAATTTCAAGCCAAAGCAAGATGCAGTGAAACAAGAAGTAGACCGTAATGAAGACATGATCCGTAGTGCTCTA CGAGCAATAGCTGCTCTGAATCGGATAAGTGGAGGTGAGTGCAGCCATAGATTCAAGAATCTGATGAGCGAAATCTCAAAATCAGCAACGCTGTGGGACA AGTACTACTCCATCCGGAATGAGTGA
AA sequence Show only first row Show all	>Lus10026261 pacid=23156484 polypeptide=Lus10026261 locus=Lus10026261.g ID=Lus10026261.BGIv1.0 annot-version=v1.0 MANLQLTGILEKMTGKDKDYRYMATSDLLNELNKEGFKADGEMETKLSNIVLQQLDDVAGDVSGLAVKCLAPLVKKVNDARVVEMTGKLCDKLLNCKDQH RDIASIALKTIIAEVTTQSLAQSVLVALTPQLTRGITSPGMVTEIKCECLDILCEVLHKFGNLMGTDHELLLGALLSQLNFSQASVRKKSVSCLASLAAS LSDDLLAKATVEVVQKLRSKGVKPEMTRTNIQMIGALSRAVGYRFGPHLEDTVPLLINYCTSASENDEELREYSLQALESFLLRCPRDISSYCDVILRLA LEYLSYDPNYTDNMEEDTDDEIHEEEEDDESANEYTDDEDVSWKVRRAAAKCLAALIVSRPELLANLYEEACPKIIDRFKEREENVKMDVFNTFIELLRQ TGNVTKGQTDMDETRQVFWLEFAPNGTNCSLMPSMLYFARWLLKQEVPKIVKSINRQLREKSIKTKVGAFSVLKELVIVLPDCLAEQIGSLIPGIEKALN DKSSTSNLKIEALVFTRLVLASHSPPVFHPFIKALSSPILSAVGERYYKVTAEALRVCGELVRVLRPNIQDHSFDFQPYVHPIYKAIMSRLTNQDQDQEV KECAISCMGLVISRFGDCLRAELSSCLPVLVDRMGNEITRLTAVKAFAVIATSPLRIDLACVLEHVIGELTAFLRKANRALRQATLATLNSLVVAYGDMI GASAYEVIIVELSTLISDLDLHMTALALELCCTLMADSRSSRSIDLAVRNKVLPQALALIKSSLLQGQALMALQNFFAALVYSVNTSFDALLDSLLSCAK PTPQSGGIAKQALHEIGQCVAVLCLAAGDQKCSSTVRMLTEILKDDSSTNSAKKHLALLCLGEIGRRKDLSAHAHIETIIIESFQSPFEEIKAAASYALG NIAVGNLSKYLPFILDQIDNQQKKQYLLLHSLKEVIVRQSVDRAEFQDSSVEKILKLLFNHCESEEEGVRNVVAECLGKIALIEPVKLIPALKVRTTSPA AFTRATVVIAVKYSIVERTEKIDEIIFSEISSFLMLIKDVDRHVRRAAVLALSTFAHNKPNLIKGILPELLPLLYDQTVVKKELIRTVDLGPFKHIVDDG LELRKAAFECVDTLLDSCLDQVNPSSFIIPHLKSGLEDHYDVKMPCHLILSKLADKCPSAVLAVLDSLVDPLQKTINFKPKQDAVKQEVDRNEDMIRSAL RAIAALNRISGGECSHRFKNLMSEISKSATLWDKYYSIRNE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G02560		TIP120, HVE, ET...	HEMIVENATA, CULLIN-ASSOCIATED ...		Lus10026261 [exp]	0	1
AT4G32700		TEB	TEBICHI, helicases;ATP-depende...		Lus10022115 [exp]	2.0	0.9425
AT2G41520		TPR15	tetratricopeptide repeat 15, H...		Lus10035427 [exp]	2.2	0.9265
AT3G13330		PA200	proteasome activating protein ...		Lus10008354 [exp]	3.5	0.9276
					Lus10016154 [exp]	4.9	0.9027
AT5G15540		EMB2773, ATSCC2	EMBRYO DEFECTIVE 2773, ARABIDO...		Lus10015385 [exp]	6.9	0.9104
AT2G20000		CDC27b, HBT	HOBBIT, CDC27 family protein ...		Lus10034945 [exp]	6.9	0.9267
AT5G47690			binding (.1.2.3)		Lus10038777 [exp]	7.6	0.9331
AT5G17020		HIT2, ATXPO1, A...	HEAT-INTOLERANT 2, ARABIDOPSIS...		Lus10038248 [exp]	7.9	0.9165
AT1G79350		EMB1135	embryo defective 1135, RING/FY...		Lus10001837 [exp]	8.9	0.8715
AT3G08850		ATRAPTOR1B, RAP...	HEAT repeat ;WD domain, G-beta...		Lus10014156 [exp]	10.0	0.8852

Compare expression of checked genes

Lus10026261 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.