Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G10250 152 / 6e-47 ATHSP22.0 HSP20-like chaperones superfamily protein (.1) AT1G07400 138 / 7e-42 HSP20-like chaperones superfamily protein (.1) AT1G59860 137 / 1e-41 HSP20-like chaperones superfamily protein (.1) AT1G53540 127 / 1e-37 HSP20-like chaperones superfamily protein (.1) AT5G59720 115 / 1e-32 HSP18.2 HSP18.1CI heat shock protein 18.2 (.1) AT2G29500 112 / 1e-31 HSP20-like chaperones superfamily protein (.1) AT3G46230 111 / 4e-31 ATHSP17.4 ARABIDOPSIS THALIANA HEAT SHOCK PROTEIN 17.4, heat shock protein 17.4 (.1) AT5G12020 99 / 2e-26 HSP17.6II 17.6 kDa class II heat shock protein (.1) AT5G12030 92 / 9e-24 AT-HSP17.6A heat shock protein 17.6A (.1) AT5G37670 84 / 1e-20 HSP15.7CI HSP20-like chaperones superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042408 [exp] 358 / 5e-128 AT4G10250 154 / 1e-47 HSP20-like chaperones superfamily protein (.1) Lus10040560 [exp] 158 / 5e-49 AT4G10250 200 / 1e-65 HSP20-like chaperones superfamily protein (.1) Lus10000932 [exp] 154 / 3e-47 AT4G10250 200 / 2e-65 HSP20-like chaperones superfamily protein (.1) Lus10009085 [exp] 122 / 2e-35 AT1G53540 232 / 2e-79 HSP20-like chaperones superfamily protein (.1) Lus10040723 [exp] 119 / 3e-34 AT2G29500 219 / 3e-74 HSP20-like chaperones superfamily protein (.1) Lus10016458 [exp] 117 / 1e-33 AT2G29500 214 / 3e-72 HSP20-like chaperones superfamily protein (.1) Lus10040722 [exp] 109 / 2e-30 AT1G07400 214 / 2e-72 HSP20-like chaperones superfamily protein (.1) Lus10016456 [exp] 107 / 1e-29 AT1G07400 213 / 8e-72 HSP20-like chaperones superfamily protein (.1) Lus10016457 [exp] 107 / 1e-29 AT1G07400 216 / 4e-73 HSP20-like chaperones superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G089200 [exp] 150 / 2e-45 AT4G10250 225 / 1e-74 HSP20-like chaperones superfamily protein (.1) Potri.004G187400 [exp] 132 / 1e-39 AT1G07400 193 / 7e-64 HSP20-like chaperones superfamily protein (.1) Potri.001G238700 [exp] 130 / 2e-38 AT1G53540 195 / 8e-65 HSP20-like chaperones superfamily protein (.1) Potri.004G187450 [exp] 127 / 3e-37 AT2G29500 221 / 5e-75 HSP20-like chaperones superfamily protein (.1) Potri.019G081250 [exp] 126 / 3e-37 AT2G29500 182 / 6e-60 HSP20-like chaperones superfamily protein (.1) Potri.009G148000 [exp] 126 / 4e-37 AT2G29500 190 / 7e-63 HSP20-like chaperones superfamily protein (.1) Potri.009G049800 [exp] 125 / 7e-37 AT2G29500 152 / 4e-48 HSP20-like chaperones superfamily protein (.1) Potri.009G147900 [exp] 125 / 7e-37 AT2G29500 193 / 5e-64 HSP20-like chaperones superfamily protein (.1) Potri.009G039200 [exp] 125 / 1e-36 AT1G07400 201 / 3e-67 HSP20-like chaperones superfamily protein (.1) Potri.009G049900 [exp] 123 / 7e-36 AT2G29500 154 / 2e-48 HSP20-like chaperones superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0190 [flax] [poplar] HSP20 PF00011 [flax] [poplar] HSP20 Hsp20/alpha crystallin family
Representative CDS sequence Show only first row Show all	>Lus10026262 pacid=23156551 polypeptide=Lus10026262 locus=Lus10026262.g ID=Lus10026262.BGIv1.0 annot-version=v1.0 ATGGCGGCCATCCCTACAATACTAGTGATCCTCATAAGCTTAATGGCAACACCTTCAGAATCCCTAATGCCTTACTCGAGATCACTGTGGGATCACATGA TGATGCTCCCAGAGGACCCATTCCGAATCTTGGAACAAACTCCACTCACTGTTCCCAAAGGAATGGAGAGTAGTACTACTCTGGCTCTGGCGAGGGCTGA TTGGAAAGAGACCCCGAAAGCACACTTGATCACCCTCGACATTCCTGGGATGAAGAGAGAGGACGTGAAGATCGAGGTGGAAGAGAATAGAGTGCTTCGG ATCAGCGGGGAGAGGAAATCGGAACAAGAAGAAGTCCAAGGGGAGATCAAGTGGCACAGAGCTGAGAGGATTTCTGGAAAGTTCTGGAGGCAGTTCAGGC TTCCTGGGAATGCTGACTTGGACAAGGTGAAAGCTTCTCTGGAAGATGGAGTGCTTACTGTCACTGTGCCCAAGGTTGCTGAGGAGAATAAGAGGCGTGC CAAGGTTATTAGCATTGCTGAGGGGGAGAAGCATTCCACTGCTCAGGAGATTGAGGCTACCAAGGCCTCTGCTTCTGCTTGA
AA sequence Show only first row Show all	>Lus10026262 pacid=23156551 polypeptide=Lus10026262 locus=Lus10026262.g ID=Lus10026262.BGIv1.0 annot-version=v1.0 MAAIPTILVILISLMATPSESLMPYSRSLWDHMMMLPEDPFRILEQTPLTVPKGMESSTTLALARADWKETPKAHLITLDIPGMKREDVKIEVEENRVLR ISGERKSEQEEVQGEIKWHRAERISGKFWRQFRLPGNADLDKVKASLEDGVLTVTVPKVAEENKRRAKVISIAEGEKHSTAQEIEATKASASA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G10250		ATHSP22.0	HSP20-like chaperones superfam...		Lus10026262 [exp]	0	1
AT5G48540			receptor-like protein kinase-r...		Lus10038227 [exp]	2.6	0.9104
AT3G54420		ATCHITIV, CHIV,...	CHITINASE CLASS IV, homolog of...		Lus10000453 [exp]	2.8	0.9011
AT2G43590			Chitinase family protein (.1)		Lus10035620 [exp]	4.7	0.8374
AT2G44800			2-oxoglutarate (2OG) and Fe(II...		Lus10018949 [exp]	6.6	0.8603
AT5G48490			Bifunctional inhibitor/lipid-t...		Lus10016323 [exp]	7.3	0.8478
AT5G60440	MADS	AGL62	AGAMOUS-like 62 (.1)		Lus10003940 [exp]	7.5	0.8428
AT1G64940		CYP89A6	"cytochrome P450, family 87, s...		Lus10013067 [exp]	8.4	0.8472
AT5G45340		CYP707A3	"cytochrome P450, family 707, ...		Lus10028594 [exp]	8.8	0.8633
AT3G25882		NIMIN-2	NIM1-interacting 2 (.1)		Lus10041460 [exp]	11.0	0.7951
AT2G15820		OTP51	ORGANELLE TRANSCRIPT PROCESSIN...		Lus10023856 [exp]	12.7	0.8421

Compare expression of checked genes

Lus10026262 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.