Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G49810 1550 / 0 MMT methionine S-methyltransferase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042407 [exp] 2145 / 0 AT5G49810 1554 / 0.0 methionine S-methyltransferase (.1) Lus10038132 [exp] 261 / 6e-78 AT5G49810 192 / 5e-54 methionine S-methyltransferase (.1) Lus10039861 [exp] 44 / 0.0005 AT2G20610 509 / 1e-179 SUPERROOT 1, ROOTY 1, ROOTY, HOOKLESS 3, ABERRANT LATERAL ROOT FORMATION 1, Tyrosine transaminase family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G229800 [exp] 1738 / 0 AT5G49810 1553 / 0.0 methionine S-methyltransferase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF05175 [flax] [poplar] MTS Methyltransferase small domain CL0061 [flax] [poplar] PLP_aminotran PF00155 [flax] [poplar] Aminotran_1_2 Aminotransferase class I and II
Representative CDS sequence Show only first row Show all	>Lus10026263 pacid=23156389 polypeptide=Lus10026263 locus=Lus10026263.g ID=Lus10026263.BGIv1.0 annot-version=v1.0 ATGGCGCCTTCCATCGACGACTTCCTGAAGCAGTGCGAGCACTCCGGCGACTCCGCCTACTCTGCCCTCCGCTCTCTGTTGGAGCGCCTGGAGGATCCCG CCACAAGGATTCAGTCTCGGATTTTCCTCTCCGATCTATACAAACGCGTCGGCGACTCCGATCAGTGCCTCACCCGATACCACTTCCGTATTCAAGACGT CCTCCTCCAACACGATGCTGATCAAGGGAGAAAGAAATTAAAAATGATGGTTATACCAAGCATCTTTCTTCCTGAGGACTGGTCCTTCACCTTCTATGAA GGACTGAATAGACACCCTGACTCTATTTTCAAGGATAGGACAGTAGCGGAGCTTGGTTGTGGGAATGGATGGATATCTATTGCAATTGCTGACAAGTGGT TGCCCTCAAAAGTATACGGCCTTGATATTAATCCAAGAGCTATAAAGGTTTCCTGGATAAACCTGTACTTAAATGCATTAGATGATGAAGGCCAACCAAT CTATGATGCAGAAAAGAAAACTTTGCTGGACAGGGTGGAGTTTTACGAATCTGATCTACTATCTCATTGTAGAGATAATGATATTCAACTTGAGCGAATT ATTGGGTGCATACCTCAGATTTTAAACCCAAACCCAGATGCAATGTCTAAACTGATCACAGAAAATGCAAGTGAAGACTTTCTGTATGATTTGAGTAACT ATTGTGCTCTTCAGGGATTTGTTGAAGATCAGTTTGGCCTAGGTCTGATTGCTAGGGCAGTTGAGGAAGGAATTGATGTCATTAAACCTTTGGGGATTAT GATCTTTAATATGGGTGGCCGTCCAGGACAAGCTGTTTGCAAGCGTTTGTTTGAGCGCCGTGGTTTCAGTATCAATAAGCTTTGGCAGACAAAAGCTTCA GATACGGATATTACCGCTTTAGTTGAAATTGAGAAGAACAGTCCTCATCGTTTTGAGTTCTTCATGGGGATTACTGGTGATCAGCCTATTTGTGCTCGAA CAGCATGGGCGTATGGTAAAGCTGGCGGTCGTATTGCTCATGCTTTGTCAGTTTACAGTTGTCAATTGCGTCAGCCACAGCAGGTCAAGAAAATATTCAA GTTTCTTAGGAATGGTTTCCATGACGTGGGTAGCTCGTTGGATTTGTCGTTTGAAGATGATGCTGTTGCAGATGAGAAGATACCATTCCTCGGTTATCTT GCCGGAGAATTGAAGGAGAATTCAAGTTTTCCATATGAGCCACCAGCTGGGAGCATGCAGTTTCGCAATCTCATTGCCGGCTTTATGAAAACATACCACC ATATTCCACTGAAGTCCAATAACGTTGTGATCTTTCCCTCAAGGGCTGTGGCAATTGAACATTTCCTTCGACTATTTTCACCTCGTCTAGCAGTTGTTGA TGAATACTTGACTCGTCATCTTCCTCGACAATGGTTAACATCTTTAGTAATCGAGGGTGCGGAGAATGGTGGCGGATCAAAAGACACAATTACTGTGATT GAAGCACCGAGGCAGTCTGATCTAATGGTAGAACTGATAACCAAGCTAAAGCCACAAGTGGTAATTACAGGGATTGCTCAGTTTGAAGATGTCACTAGTT CTGCGTTTGTACACCTTTTAGATGTTACCAGGCAAATTGGGTCTCGGCTTTTCTTGGACATATCTGATCAGTTTGAGCTGTCAAGCCTTCCAAGTACCAA TGGGGTACTAAAATACCTTGCAGGAAATGTGTTACCACCGCATGCTGCAATCGTCTGCGGTCTTGTGAAAAACAAGGTTTATTCGGATTTAGAAGTTGCT TTTGTCATCTCAGAAGAAGAGGCCATCTTCAAGGCATTGTCCAAAACAGTGGAAGTACTAGAGGGGAATACTACGCCAATTAGGCAATATTACTACGGTT GCCTTTTCCATGAGCTTCTGGCATTTCAGCTTGCAGATCGTCATCCATCTATTGAGAGGAATAATGAGAAAGCCAAATCAGCTGAGTTGATAGGGTTTTC AAGTTCAGCAATCTCCGTTCTTGATCATTCCGAGATGTCAATTGGCGAGAGTGAGAAGTCGTCCTTGATTCACATGGATGTAGACCAAAGCTTCTTGCCT ACTCCAGCCGCTGTCAAGGCCTCAATCTTTGAAAGCTTTGCAAGACAGAACATGACAGAGGCTGAAGTTGATGTTAGTCCTAGCATCAAACAATTCGTTA AAAGTAACTACGGACTTCTAACTGACAGCTCTTCGGAGTTTATTTATACGGACAGCACACAAGGTATTCTCAATAGGTTGATCCTCTGCTGCAATCAAGA AGGTGGGACATTATGCTTTCCATCTGGCTCGAACGGTAACCACAATTCTTCTGCCAAGTTTCTGAAAGCAAGCCTCGTCACCATCCCCACTGAGGGCTTC AAGCTTACCGCCGAACAGCTCAACAAAGTACTCGAGTCGGTCAAGAAGCCATGGGTATACATTTGTGGTCCTACAGCGAATCCAGCAGGATTGATCTACA GTAATAAAGAGATGGGTAGTATATTAAACACTTGTGCCAAATTCGGGGCAAGGGTTATAATTGATACTTCATTCTCAGGATTGGAATTTGATCAAGGTTG GGGTGGATGGAATTTGGATTCCATTTTATCAAAGCTCACTTCCTCCAACCCTTCTTTTTGCGTCTCCCTTTTTGGAGGAATGTCTCTGAAGATGTTCAGT GGTGCACTGAGATTCGGGTTTCTGATTTTGAACAACCCCGGGTTGGCCGATTCGTTTCATGGTTTTCCCGGATTGAGTAAGCCTCACGTCACAATGAGGT ATGCTGTAAAGAAATTACTTGGTCTAAACGAGCAGAAAGTTGGGGAGCTGACAAACGCAGTAGCTGAAAATACAAAAACTCTGAAATCCAGAGCTCAGCG CCTGAAAGAGACACTAGAGAAATACGGGTGGGAAGTGGTGGCGCCTCAAGGTGGCATTTCAATGGTGGCAAAACCCTCGCTGTATCTGAACAAGGAAGTG AATATGAACGATGGCAAGAAGGTTAAGGTGGATGACTCGAACATCAGGGACGCCATTTTGCAGCGCACAGGGCTATGCATCAACAGTGCCAAGTGGACAG GGGTACCTGGGTATTGCCGCTTCACAACAGCGCTTTCAGACAGTGATTTTGAGAGAGCATTGGATTGCATCAGGACGTTCAAGGATGCCCTCAACGGCTG A
AA sequence Show only first row Show all	>Lus10026263 pacid=23156389 polypeptide=Lus10026263 locus=Lus10026263.g ID=Lus10026263.BGIv1.0 annot-version=v1.0 MAPSIDDFLKQCEHSGDSAYSALRSLLERLEDPATRIQSRIFLSDLYKRVGDSDQCLTRYHFRIQDVLLQHDADQGRKKLKMMVIPSIFLPEDWSFTFYE GLNRHPDSIFKDRTVAELGCGNGWISIAIADKWLPSKVYGLDINPRAIKVSWINLYLNALDDEGQPIYDAEKKTLLDRVEFYESDLLSHCRDNDIQLERI IGCIPQILNPNPDAMSKLITENASEDFLYDLSNYCALQGFVEDQFGLGLIARAVEEGIDVIKPLGIMIFNMGGRPGQAVCKRLFERRGFSINKLWQTKAS DTDITALVEIEKNSPHRFEFFMGITGDQPICARTAWAYGKAGGRIAHALSVYSCQLRQPQQVKKIFKFLRNGFHDVGSSLDLSFEDDAVADEKIPFLGYL AGELKENSSFPYEPPAGSMQFRNLIAGFMKTYHHIPLKSNNVVIFPSRAVAIEHFLRLFSPRLAVVDEYLTRHLPRQWLTSLVIEGAENGGGSKDTITVI EAPRQSDLMVELITKLKPQVVITGIAQFEDVTSSAFVHLLDVTRQIGSRLFLDISDQFELSSLPSTNGVLKYLAGNVLPPHAAIVCGLVKNKVYSDLEVA FVISEEEAIFKALSKTVEVLEGNTTPIRQYYYGCLFHELLAFQLADRHPSIERNNEKAKSAELIGFSSSAISVLDHSEMSIGESEKSSLIHMDVDQSFLP TPAAVKASIFESFARQNMTEAEVDVSPSIKQFVKSNYGLLTDSSSEFIYTDSTQGILNRLILCCNQEGGTLCFPSGSNGNHNSSAKFLKASLVTIPTEGF KLTAEQLNKVLESVKKPWVYICGPTANPAGLIYSNKEMGSILNTCAKFGARVIIDTSFSGLEFDQGWGGWNLDSILSKLTSSNPSFCVSLFGGMSLKMFS GALRFGFLILNNPGLADSFHGFPGLSKPHVTMRYAVKKLLGLNEQKVGELTNAVAENTKTLKSRAQRLKETLEKYGWEVVAPQGGISMVAKPSLYLNKEV NMNDGKKVKVDDSNIRDAILQRTGLCINSAKWTGVPGYCRFTTALSDSDFERALDCIRTFKDALNG

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G49810		MMT	methionine S-methyltransferase...		Lus10026263 [exp]	0	1
AT5G35160			Endomembrane protein 70 protei...		Lus10005060 [exp]	7.2	0.8466
AT5G65750			2-oxoglutarate dehydrogenase, ...		Lus10031476 [exp]	9.4	0.8416
AT3G54540		ABCF4, ATGCN4	ATP-binding cassette F4, gener...		Lus10016184 [exp]	11.1	0.8390
AT5G63840		PSL5, RSW3	RADIAL SWELLING 3, PRIORITY IN...		Lus10033490 [exp]	16.0	0.8377
AT1G67680			SRP72 RNA-binding domain (.1)		Lus10006439 [exp]	18.1	0.8127
AT3G58050			unknown protein		Lus10017239 [exp]	19.6	0.8098
AT1G29150		RPN6, ATS9	REGULATORY PARTICLE NON-ATPASE...		Lus10037125 [exp]	20.8	0.7916
AT1G05940		CAT9	cationic amino acid transporte...		Lus10028195 [exp]	22.0	0.7824
AT3G07080			EamA-like transporter family (...		Lus10011864 [exp]	22.4	0.8151
AT3G15730		PLDALPHA1	phospholipase D alpha 1 (.1)		Lus10031634 [exp]	25.7	0.7829

Compare expression of checked genes

Lus10026263 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.