Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G24700 159 / 4e-43 B3 REM10 Transcriptional factor B3 family protein (.1) AT1G26680 146 / 1e-37 B3 REM17 transcriptional factor B3 family protein (.1) AT2G24645 133 / 3e-34 Transcriptional factor B3 family protein (.1) AT4G00260 132 / 1e-33 B3 MEE45 maternal effect embryo arrest 45, Transcriptional factor B3 family protein (.1) AT4G31690 128 / 1e-32 B3 REM9 Transcriptional factor B3 family protein (.1) AT4G31680 127 / 5e-32 B3 REM8 Transcriptional factor B3 family protein (.1) AT4G31640 117 / 3e-29 B3 REM5 transcriptional factor B3 family protein (.1) AT4G31660 108 / 5e-27 B3 REM7 AP2/B3-like transcriptional factor family protein (.1) AT4G31650 99 / 4e-22 B3 REM6 Transcriptional factor B3 family protein (.1) AT5G32460 86 / 5e-18 Transcriptional factor B3 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026265 [exp] 472 / 6e-166 AT4G31650 154 / 6e-41 Transcriptional factor B3 family protein (.1) Lus10042406 [exp] 327 / 1e-109 AT4G31690 130 / 3e-34 Transcriptional factor B3 family protein (.1) Lus10026234 [exp] 241 / 9e-75 AT1G26680 152 / 8e-40 transcriptional factor B3 family protein (.1) Lus10026921 [exp] 100 / 6e-23 AT1G26680 90 / 2e-19 transcriptional factor B3 family protein (.1) Lus10035637 [exp] 67 / 1e-11 AT3G18990 91 / 9e-20 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Lus10023691 [exp] 63 / 2e-10 AT4G33280 192 / 4e-57 AP2/B3-like transcriptional factor family protein (.1) Lus10026067 [exp] 58 / 4e-09 AT3G18990 76 / 6e-16 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Lus10016285 [exp] 58 / 6e-09 AT4G33280 139 / 3e-37 AP2/B3-like transcriptional factor family protein (.1) Lus10010759 [exp] 56 / 2e-08 AT3G18990 91 / 1e-20 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G036900 [exp] 66 / 2e-11 AT4G33280 256 / 5e-83 AP2/B3-like transcriptional factor family protein (.1) Potri.004G230100 [exp] 66 / 3e-11 AT3G18990 161 / 1e-44 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Potri.010G191500 [exp] 60 / 1e-09 AT3G18990 189 / 5e-57 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Potri.002G129800 [exp] 59 / 2e-09 AT4G33280 159 / 9e-45 AP2/B3-like transcriptional factor family protein (.1) Potri.002G129900 [exp] 57 / 1e-08 AT4G33280 237 / 9e-76 AP2/B3-like transcriptional factor family protein (.1) Potri.009G108500 [exp] 56 / 2e-08 AT3G18990 395 / 2e-137 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Potri.004G146900 [exp] 55 / 6e-08 AT3G18990 353 / 6e-121 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Potri.007G035500 [exp] 54 / 7e-08 AT5G66980 102 / 4e-25 AP2/B3-like transcriptional factor family protein (.1) Potri.014G036800 [exp] 54 / 1e-07 AT3G18990 92 / 3e-20 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Potri.004G147000 [exp] 54 / 1e-07 AT3G18990 258 / 3e-83 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0405 [flax] [poplar] DNA_b-psBarrel PF02362 [flax] [poplar] B3 B3 DNA binding domain
Representative CDS sequence Show only first row Show all	>Lus10026264 pacid=23156548 polypeptide=Lus10026264 locus=Lus10026264.g ID=Lus10026264.BGIv1.0 annot-version=v1.0 ATGGCGGACGGCGGCAAACAACACTTTTTTCGCCCTCTACTTCCTGGTTTCGAGCATCGACTTTCAATTCCTGTGGCTTTCTCCAAGCACTTGAATGGCG CGGAAGATGCTGTGCTGAGAAGCTCCAGTGGCAAATCTTACCCGGTGAATACAAGCGGCAGGGAGTTTAAAGGCGAAGGATGGAAGGAGTTCGTTGCCGA TCAAAGCTTGCATGTGGGCGATTTCTTGGTTTTCAGATACGACAATACTCAAAAGGTGTTCGACATAATGTCGTTCGACCCCAGTGCCTGTGAATTTCAA TACCCTCCTTCCTCTTCATCCACTCTTCCGTTGCATGCTTCCGTCAGAACAGAGCACGATGATGCTGAAGAAGCACTTGATAACAATTCAGGACGGAAAC GCAAAGAGACTGACCAACTGCAGGATAAAGGTGGAAGGTCCATGCCAACAAATCCTTTCTTTGTGGTGACTATGAGGAAATACAACCTGAAAAAGAACAG GCTGCTCATCCCGAAAGAATTCGCGAGGGATAATGATCTGGAATCCATGAGCCATCGAAGTGCAATTCTTTTGAATGAAGAGGGAAGATCGTGGCCAGTG GACATGCATAGCTACAAGAAGCATTGTTTCGGGAAATATTTTCACCAAGTAGCTCTTAGACGAGGAATCGATCGATTCCAGGAAGAGAACAATCTGGAAT TGGGAGATACTTTCAATTTAGAGCTTGTTCAAGGTGGAGAGAACCCTGTGTTCAAAATGTCTGGGGTGCATTTCAATCCCATGGTAATTGAAGAGGAAAC AGAGAAGGAGAGGATAAAGAAGGTAGAAAGGAAAGTCCAGAAGGAGCAAATTTCTCCTGCCTCTTCAATGACCATGCATCCTTATTTCCTTGTCAAGATG ACCAGGACCTATCTCACAAGATATTTACTGTATATCCCACTAGACTTTACTGAAAAGAATGGGTTAACGGCAGATTTAATACCTTCCATGATCTTAAGAA ATGAGGAAGGAAGTTCCTTTCCGGTGGGACTAAAGACCATGAAGGGGGGTAGAGCCGTCATTAAAAGTGGGTGGAAGGAAGTAGTGCAGGAAAATGGTCT GAAAGAGGGAGATGTCTTGTTGTTCCAACTCATTGAAACTGGCACAAAACCAGTCATGACGTTTAAGGTAGGTAAACTAACCAAGTCGAAAACCTTTGTA TGTTCAGACTTGGATGCTCACCCAGTGAGCTGCACAATGCTTAATACATGCTTGGAGTTAAAGCGTTTTATGTTTCACAGCCATATAGACCCTAATACTG GATAG
AA sequence Show only first row Show all	>Lus10026264 pacid=23156548 polypeptide=Lus10026264 locus=Lus10026264.g ID=Lus10026264.BGIv1.0 annot-version=v1.0 MADGGKQHFFRPLLPGFEHRLSIPVAFSKHLNGAEDAVLRSSSGKSYPVNTSGREFKGEGWKEFVADQSLHVGDFLVFRYDNTQKVFDIMSFDPSACEFQ YPPSSSSTLPLHASVRTEHDDAEEALDNNSGRKRKETDQLQDKGGRSMPTNPFFVVTMRKYNLKKNRLLIPKEFARDNDLESMSHRSAILLNEEGRSWPV DMHSYKKHCFGKYFHQVALRRGIDRFQEENNLELGDTFNLELVQGGENPVFKMSGVHFNPMVIEEETEKERIKKVERKVQKEQISPASSMTMHPYFLVKM TRTYLTRYLLYIPLDFTEKNGLTADLIPSMILRNEEGSSFPVGLKTMKGGRAVIKSGWKEVVQENGLKEGDVLLFQLIETGTKPVMTFKVGKLTKSKTFV CSDLDAHPVSCTMLNTCLELKRFMFHSHIDPNTG

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G24700	B3	REM10	Transcriptional factor B3 fami...		Lus10026264 [exp]	0	1
AT1G67710	GARP	ARR11	response regulator 11 (.1)		Lus10006446 [exp]	7.2	0.9009
AT3G61440		ATCYSC1, ARATH;...	BETA-SUBSTITUTED ALA SYNTHASE ...		Lus10014765 [exp]	10.1	0.8623
AT5G12010			unknown protein		Lus10024997 [exp]	11.8	0.8868
AT1G26870	NAC	FEZ, ANAC009	FEZ, Arabidopsis NAC domain co...		Lus10015367 [exp]	14.1	0.8697
AT3G07680			emp24/gp25L/p24 family/GOLD fa...		Lus10036603 [exp]	15.1	0.9051
AT3G13050		AtNiaP	nicotinate transporter, Major ...		Lus10037295 [exp]	16.5	0.8381
AT4G24040		TREHALASE1, ATT...	trehalase 1 (.1)		Lus10023035 [exp]	20.3	0.8941
AT2G33580			Protein kinase superfamily pro...		Lus10019662 [exp]	24.8	0.8635
AT4G21200		ATGA2OX8	ARABIDOPSIS THALIANA GIBBERELL...		Lus10012912 [exp]	26.7	0.8138
AT3G58360			TRAF-like family protein (.1)		Lus10012948 [exp]	27.2	0.8797

Compare expression of checked genes

Lus10026264 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.