Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G26680 154 / 6e-41 B3 REM17 transcriptional factor B3 family protein (.1) AT2G24700 147 / 4e-39 B3 REM10 Transcriptional factor B3 family protein (.1) AT4G00260 132 / 6e-34 B3 MEE45 maternal effect embryo arrest 45, Transcriptional factor B3 family protein (.1) AT4G31690 129 / 5e-33 B3 REM9 Transcriptional factor B3 family protein (.1) AT4G31640 126 / 7e-33 B3 REM5 transcriptional factor B3 family protein (.1) AT4G31650 124 / 3e-31 B3 REM6 Transcriptional factor B3 family protein (.1) AT4G31680 122 / 9e-31 B3 REM8 Transcriptional factor B3 family protein (.1) AT2G24645 111 / 1e-26 Transcriptional factor B3 family protein (.1) AT4G31660 102 / 7e-25 B3 REM7 AP2/B3-like transcriptional factor family protein (.1) AT5G32460 106 / 8e-25 Transcriptional factor B3 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026264 [exp] 506 / 3e-179 AT2G24700 174 / 2e-48 Transcriptional factor B3 family protein (.1) Lus10042406 [exp] 421 / 5e-147 AT4G31690 130 / 3e-34 Transcriptional factor B3 family protein (.1) Lus10026234 [exp] 236 / 1e-73 AT1G26680 152 / 8e-40 transcriptional factor B3 family protein (.1) Lus10026921 [exp] 129 / 2e-33 AT1G26680 90 / 2e-19 transcriptional factor B3 family protein (.1) Lus10039303 [exp] 69 / 2e-12 AT3G18990 76 / 1e-14 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Lus10023691 [exp] 63 / 2e-10 AT4G33280 192 / 4e-57 AP2/B3-like transcriptional factor family protein (.1) Lus10035637 [exp] 63 / 2e-10 AT3G18990 91 / 9e-20 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Lus10032871 [exp] 62 / 4e-10 AT4G33280 152 / 1e-42 AP2/B3-like transcriptional factor family protein (.1) Lus10016285 [exp] 59 / 2e-09 AT4G33280 139 / 3e-37 AP2/B3-like transcriptional factor family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G146900 [exp] 65 / 3e-11 AT3G18990 353 / 6e-121 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Potri.014G036900 [exp] 64 / 4e-11 AT4G33280 256 / 5e-83 AP2/B3-like transcriptional factor family protein (.1) Potri.002G129800 [exp] 60 / 1e-09 AT4G33280 159 / 9e-45 AP2/B3-like transcriptional factor family protein (.1) Potri.004G147000 [exp] 59 / 3e-09 AT3G18990 258 / 3e-83 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Potri.010G191500 [exp] 54 / 7e-08 AT3G18990 189 / 5e-57 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Potri.002G129900 [exp] 54 / 1e-07 AT4G33280 237 / 9e-76 AP2/B3-like transcriptional factor family protein (.1) Potri.009G108500 [exp] 53 / 2e-07 AT3G18990 395 / 2e-137 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Potri.014G036800 [exp] 52 / 5e-07 AT3G18990 92 / 3e-20 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Potri.012G093200 [exp] 49 / 3e-06 AT3G18960 62 / 2e-11 AP2/B3-like transcriptional factor family protein (.1) Potri.004G230100 [exp] 49 / 5e-06 AT3G18990 161 / 1e-44 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0405 [flax] [poplar] DNA_b-psBarrel PF02362 [flax] [poplar] B3 B3 DNA binding domain
Representative CDS sequence Show only first row Show all	>Lus10026265 pacid=23156496 polypeptide=Lus10026265 locus=Lus10026265.g ID=Lus10026265.BGIv1.0 annot-version=v1.0 ATGGCGGATGGCAAACCCCACTTCTTTCGCCCACTCCTTCCTGGGTTTGAGCACCGCCTTGCGATTCCAGTGGCATTCACTAAGTACCTGGACGACGGGG AAGCTGCTGTGCTGCGAAGCTCCTGTGGGAAATGTTACCTGGTGAATATAAGCGGCAGAGATTTCAAAGATGAAGGATGGAAGGAGTTCGTCGCCGATAA CAGCTTGCATGTAGGCGATTTCTTGGTTTTCAGATACAACAATGCCCACAAGGTGTTCGACGTAATGGCGTTCGACCCCAGTGCCTGTGAATTTCAGTAC CCTCCTTCCTCTTCATCCACTCTTCCGTTTCATGCTTCTAACAGAATAGAGGATACTAATGAAGAAGCACTTGAAAACGGAAGAGATCATCATAGACCAA CATACGGAAAGAAGGATCAAGTGAAGGAGAAAGGTGATTCGTGCGTGCCGAAAAACCCTTCCTTTGTGGTAACTATAAGGAGATGGAACCTAGAAAGGAA GAGCCTGCATATCCCTAAAACCTTTGCGAGAAAGAATGATCTGGAATCGATGGGCCGTCGAAGTGTGATTCTCTTGAATGAAGAAGGAAGGTCATGGACA ACGGACTTAATTGGTTACAAGAAGCTTATTAGCCACTCTAAGCTTGATAGACAAGCAGTTCTTGACAAAGGATTACATCGATTCCTGGAGGAGAACAGGC TGAAGCTGGGAGATACTTTCAATTTGGAACTTGTTCAAAGTGGAAACAACCCGGTATTCAAAATGTCTGGGTTGCATTCAAATCCGGCGGTGATAAAAGA GGAGATGGAGAAGGTTAGGATAAAGAAGATAGAAATGATGATCGAGAAGGAGCGAAGTTCCCCCGGCTCTTCAACGATCATGCATCCCTATTTCCTTGTC AGAATGACCGGGACCTATCTCAGAGGAAGCATACTGATTGTACCACTGGGATTCTGCAAAATGAATGGTTTAACAGGTGTAACATGCTCCATGACCCTCA GAAATGATAGAGGAAGTTGCTACCCGGTGATATTAAAGTCCATTAAGGACCGTGCAGCCTGCATTGGAAGTGGCTGGAAGGAAGTAGTGAAGGAAAATGG TCTACAGGAGGGGGATATCTTGATGTTCGAACTCGTTGAAACTGGAACCAAACCAGTCATAACGTTTAAGGTAACCCAAGTGCTTGTTACAATCACAATG CATTAA
AA sequence Show only first row Show all	>Lus10026265 pacid=23156496 polypeptide=Lus10026265 locus=Lus10026265.g ID=Lus10026265.BGIv1.0 annot-version=v1.0 MADGKPHFFRPLLPGFEHRLAIPVAFTKYLDDGEAAVLRSSCGKCYLVNISGRDFKDEGWKEFVADNSLHVGDFLVFRYNNAHKVFDVMAFDPSACEFQY PPSSSSTLPFHASNRIEDTNEEALENGRDHHRPTYGKKDQVKEKGDSCVPKNPSFVVTIRRWNLERKSLHIPKTFARKNDLESMGRRSVILLNEEGRSWT TDLIGYKKLISHSKLDRQAVLDKGLHRFLEENRLKLGDTFNLELVQSGNNPVFKMSGLHSNPAVIKEEMEKVRIKKIEMMIEKERSSPGSSTIMHPYFLV RMTGTYLRGSILIVPLGFCKMNGLTGVTCSMTLRNDRGSCYPVILKSIKDRAACIGSGWKEVVKENGLQEGDILMFELVETGTKPVITFKVTQVLVTITM H

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G31650	B3	REM6	Transcriptional factor B3 fami...		Lus10026265 [exp]	0	1
AT5G02710			unknown protein		Lus10015040 [exp]	2.0	0.8477
AT1G26090			P-loop containing nucleoside t...		Lus10034381 [exp]	9.4	0.7973
AT5G02710			unknown protein		Lus10003988 [exp]	9.8	0.8178
AT3G29185			Domain of unknown function (DU...		Lus10032999 [exp]	15.3	0.8398
AT5G18590			Galactose oxidase/kelch repeat...		Lus10043420 [exp]	18.4	0.7385
AT4G38900	bZIP	AtbZIP29	Basic-leucine zipper (bZIP) tr...		Lus10012391 [exp]	26.2	0.7641
AT5G58070		ATTIL	temperature-induced lipocalin ...		Lus10019048 [exp]	33.7	0.7578
AT1G74350			Intron maturase, type II famil...		Lus10017037 [exp]	35.2	0.6972
AT3G52270			Transcription initiation facto...		Lus10040384 [exp]	37.3	0.6786
AT5G38290			Peptidyl-tRNA hydrolase family...		Lus10031327 [exp]	40.4	0.7778

Compare expression of checked genes

Lus10026265 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.