Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G10220 379 / 1e-134 EMB2804 EMBRYO DEFECTIVE 2804, tubulin folding cofactor B (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042405 [exp] 488 / 1e-177 AT3G10220 376 / 2e-133 EMBRYO DEFECTIVE 2804, tubulin folding cofactor B (.1) Lus10003518 [exp] 58 / 2e-09 AT1G71440 637 / 0.0 TUBULIN-FOLDING COFACTOR E, tubulin folding cofactor E / Pfifferling (PFI) (.1) Lus10002949 [exp] 55 / 1e-08 AT1G71440 503 / 2e-176 TUBULIN-FOLDING COFACTOR E, tubulin folding cofactor E / Pfifferling (PFI) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G041400 [exp] 410 / 4e-147 AT3G10220 388 / 3e-138 EMBRYO DEFECTIVE 2804, tubulin folding cofactor B (.1) Potri.019G072700 [exp] 52 / 2e-07 AT1G71440 646 / 0.0 TUBULIN-FOLDING COFACTOR E, tubulin folding cofactor E / Pfifferling (PFI) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0010 [flax] [poplar] SH3 PF01302 [flax] [poplar] CAP_GLY CAP-Gly domain
Representative CDS sequence Show only first row Show all	>Lus10026266 pacid=23156535 polypeptide=Lus10026266 locus=Lus10026266.g ID=Lus10026266.BGIv1.0 annot-version=v1.0 ATGGCGCCTCGGTTTCAAATTGAGGATGATGATTCAGTTCTCCTCCGTGTCACTCATGCCAATCTCAAAACCTTCGCTACTGAAGTCCGCTTCTCTCGTC AGTTAACAATAGAAGCAGTGAAGGACAAGCTGTGGAGGAAATGCGGCACTTCTGTCAATTCAATGTCGTTGGAGCTTTATGATGATGCTAACACCAAAGT TGCTGATTTGAATGATCCCTCTTCTCCTCTAGGTTTTTACTCTCCTATTGACGGGTTCCGGATTAACATTATAGATCTTGACCCATCATCAGTAACTTCT GGTGGCTGGTTGGAAGACACCTCATTGGTGGAGAAGTACACAATCTCCGATGAAGCATATGATAAACTTGATGGAACTTTCAGGAAATTCAAAGGAAAAA TGGCGTCTCAAAATCCATCAGCCTTTGAGCCAAAGATAACAGACAACTATATGGAAGAAGTGTGTGCAGATATGAAGGTAGGAGATAGATGTGAAGTTCA ACCAGGGGAGAAACGAGGGGTTGTCAAGTTTGTTGGTCGAGCTGAACCTCTTGGACCGGGCTTTTGGGTTGGAGTTCAGTATGATGAGCCGTTGGGGAAA CACGATGGCATGGTGAAAGGGACCCGATATTTTGAATGTCCTCCTCTTCATGGTGCCATAGTGAGGCCAGACAAAGTAAAGGTGGGTGACTATCCAGAAA GAGATCCCTTCGAAGATGAAGAAATATGA
AA sequence Show only first row Show all	>Lus10026266 pacid=23156535 polypeptide=Lus10026266 locus=Lus10026266.g ID=Lus10026266.BGIv1.0 annot-version=v1.0 MAPRFQIEDDDSVLLRVTHANLKTFATEVRFSRQLTIEAVKDKLWRKCGTSVNSMSLELYDDANTKVADLNDPSSPLGFYSPIDGFRINIIDLDPSSVTS GGWLEDTSLVEKYTISDEAYDKLDGTFRKFKGKMASQNPSAFEPKITDNYMEEVCADMKVGDRCEVQPGEKRGVVKFVGRAEPLGPGFWVGVQYDEPLGK HDGMVKGTRYFECPPLHGAIVRPDKVKVGDYPERDPFEDEEI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G10220		EMB2804	EMBRYO DEFECTIVE 2804, tubulin...		Lus10026266 [exp]	0	1
AT5G54310		NEV, AGD5	NEVERSHED, ARF-GAP domain 5 (....		Lus10037882 [exp]	7.9	0.7795
AT2G19810	C3HZnF	AtOZF1	Oxidation-related Zinc Finger ...		Lus10012922 [exp]	9.5	0.7546
AT3G44850			Protein kinase superfamily pro...		Lus10005363 [exp]	9.8	0.7595
AT5G54310		NEV, AGD5	NEVERSHED, ARF-GAP domain 5 (....		Lus10038582 [exp]	14.1	0.7532
AT5G56550		ATOXS3	oxidative stress 3 (.1)		Lus10012939 [exp]	16.7	0.7604
AT4G36040		J11	DnaJ11, Chaperone DnaJ-domain ...		Lus10013558 [exp]	18.2	0.7524
AT3G49940	AS2	LBD38	LOB domain-containing protein ...		Lus10011530 [exp]	26.5	0.7337
AT1G56220			Dormancy/auxin associated fami...		Lus10031488 [exp]	28.2	0.7368
AT4G10730			Protein kinase superfamily pro...		Lus10017326 [exp]	32.3	0.7541
AT5G56550		ATOXS3	oxidative stress 3 (.1)		Lus10034985 [exp]	32.4	0.7559

Compare expression of checked genes

Lus10026266 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.