Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G02330 290 / 7e-98 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042403 [exp] 417 / 7e-148 AT1G02330 357 / 1e-124 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G110200 [exp] 304 / 1e-103 AT1G02330 336 / 1e-116 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07052 [flax] [poplar] Hep_59 Hepatocellular carcinoma-associated antigen 59
Representative CDS sequence Show only first row Show all	>Lus10026267 pacid=23156437 polypeptide=Lus10026267 locus=Lus10026267.g ID=Lus10026267.BGIv1.0 annot-version=v1.0 ATGCCCACCGGAACAGAGATGCAGAATAAGAACAAGAATTTCAGGAAGAGGGCTCTTCCAGAAGAGGAGGAAGGAGAATCCGGAAACCGTCAACCTAACA ATCCCAACACCAGCTTATCAGACAACGATGACGATGAAGAAAGGAGATTGGCATTAGAAGAAGTCAAATTCCTTCAGAAACAGCGACAGAGGAAATATGG AATTCCTGCGCTTCCCTCGTCCCAATCACTGTCCTCCTCATTATCCAAGAAACTAGCTGATAGTAACGACGCTGCAGCCGCCGCAGCTGCTGCTTCCGCC GGAGGAGGAGATGGGGAAAAGGAGGAGCTCGTCCTTCAAGACACCTTCGCTCAAGAAACTGCCGTTATGGTTGAAGACCCCAACATGTTGAAGTATGTTG AGCAGGAATTAGCTAAGAAAAGAGGAAAGAACGTTGACACAGAAGATCAAGTTGAGAATGAGTTGAAGCAGGCTGAGGATGAACTATACAAAATCCCTGA ACATCTTAAAGTTAAAAAGCGTAACTCGGAAGAGAGCTCTACCCAATGGACTACAGGCATTGCAGAAGTTCAGTTGCCAATTGAATATAAGCTGAAAAAC ATTGAAGAAACAGAAGCAGCCAAGAAGCTATTGCAGGAGAAGAGGTTGATGGGAAGAGCAAAATCTGACTTTAATATCCCATCCAGTTACAGTGCTGATT ATTTCCAGCGGGGTAGAGATTACGCCGAGAAACTCCGAAGAGAACATCCAGAGTTGTACAACAAGGAAGGGAAGCCGTCAAAGGAGGACGGAGGTGTATC CAAACCTACTTCAGATAACAATAATACAGAAGCAGGAGCAGCAGCTCGCAGGGAAGCTGCAACGGATCAGATAATGCTAGAACGATTCAGAAAACGGGAG CGTAATCGTGTTATGCGGAGATGA
AA sequence Show only first row Show all	>Lus10026267 pacid=23156437 polypeptide=Lus10026267 locus=Lus10026267.g ID=Lus10026267.BGIv1.0 annot-version=v1.0 MPTGTEMQNKNKNFRKRALPEEEEGESGNRQPNNPNTSLSDNDDDEERRLALEEVKFLQKQRQRKYGIPALPSSQSLSSSLSKKLADSNDAAAAAAAASA GGGDGEKEELVLQDTFAQETAVMVEDPNMLKYVEQELAKKRGKNVDTEDQVENELKQAEDELYKIPEHLKVKKRNSEESSTQWTTGIAEVQLPIEYKLKN IEETEAAKKLLQEKRLMGRAKSDFNIPSSYSADYFQRGRDYAEKLRREHPELYNKEGKPSKEDGGVSKPTSDNNNTEAGAAARREAATDQIMLERFRKRE RNRVMRR

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G02330			unknown protein		Lus10026267 [exp]	0	1
AT2G02470	Alfin	AL6	alfin-like 6 (.1.2)		Lus10026268 [exp]	2.8	0.8638
AT1G36050			Endoplasmic reticulum vesicle ...		Lus10036158 [exp]	3.5	0.8454
AT3G57650		LPAT2	lysophosphatidyl acyltransfera...		Lus10040492 [exp]	8.7	0.8051
AT5G10510	AP2_ERF	PLT3, AIL6	PLETHORA 3, AINTEGUMENTA-like ...		Lus10012728 [exp]	8.9	0.8536
AT5G38720			unknown protein		Lus10023232 [exp]	14.4	0.8504
AT4G21800		QQT2	quatre-quart2, P-loop containi...		Lus10040022 [exp]	23.8	0.8177
AT3G19670		ATPRP40B	pre-mRNA-processing protein 40...		Lus10006142 [exp]	26.5	0.8004
AT1G44910		ATPRP40A	pre-mRNA-processing protein 40...		Lus10007723 [exp]	26.6	0.8149
AT1G04950		EMB2781, ATTAF6...	TBP-associated factor 6, EMBRY...		Lus10016578 [exp]	27.7	0.8228
AT5G12330		LRP1	LATERAL ROOT PRIMORDIUM 1, Lat...		Lus10036032 [exp]	28.2	0.8138

Compare expression of checked genes

Lus10026267 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.