Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G02470 335 / 4e-117 Alfin AL6 alfin-like 6 (.1.2) AT1G14510 316 / 1e-109 Alfin AL7 alfin-like 7 (.1) AT5G20510 290 / 2e-99 Alfin AL5 alfin-like 5 (.1) AT3G42790 290 / 2e-99 Alfin AL3 alfin-like 3 (.1) AT5G26210 249 / 5e-83 Alfin AL4 alfin-like 4 (.1) AT5G05610 243 / 5e-81 Alfin AL1 alfin-like 1 (.1.2) AT3G11200 230 / 1e-75 Alfin AL2 alfin-like 2 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026268 [exp] 404 / 3e-144 AT2G02470 382 / 2e-135 alfin-like 6 (.1.2) Lus10042402 [exp] 371 / 2e-131 AT2G02470 357 / 4e-126 alfin-like 6 (.1.2) Lus10042404 [exp] 283 / 8e-98 AT2G02470 255 / 6e-87 alfin-like 6 (.1.2) Lus10015637 [exp] 282 / 4e-96 AT5G20510 353 / 4e-124 alfin-like 5 (.1) Lus10028280 [exp] 243 / 8e-81 AT5G05610 333 / 7e-117 alfin-like 1 (.1.2) Lus10005035 [exp] 241 / 3e-80 AT5G05610 325 / 2e-113 alfin-like 1 (.1.2) Lus10014843 [exp] 241 / 3e-80 AT5G05610 363 / 2e-128 alfin-like 1 (.1.2) Lus10009889 [exp] 241 / 4e-80 AT5G05610 358 / 2e-126 alfin-like 1 (.1.2) Lus10040207 [exp] 237 / 8e-79 AT5G05610 309 / 2e-107 alfin-like 1 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G044700 [exp] 382 / 1e-135 AT2G02470 363 / 3e-128 alfin-like 6 (.1.2) Potri.004G230500 [exp] 378 / 7e-134 AT2G02470 361 / 3e-127 alfin-like 6 (.1.2) Potri.018G050200 [exp] 301 / 2e-103 AT5G20510 343 / 4e-120 alfin-like 5 (.1) Potri.006G223500 [exp] 299 / 6e-103 AT5G20510 327 / 5e-114 alfin-like 5 (.1) Potri.006G145300 [exp] 284 / 7e-97 AT5G20510 311 / 1e-107 alfin-like 5 (.1) Potri.010G188100 [exp] 245 / 7e-82 AT5G05610 333 / 6e-117 alfin-like 1 (.1.2) Potri.008G069200 [exp] 240 / 9e-80 AT5G05610 336 / 5e-118 alfin-like 1 (.1.2) Potri.006G100900 [exp] 238 / 3e-79 AT5G05610 311 / 6e-108 alfin-like 1 (.1.2) Potri.016G116900 [exp] 234 / 2e-77 AT5G05610 305 / 1e-105 alfin-like 1 (.1.2) Potri.009G121000 [exp] 42 / 0.0002 AT4G39100 318 / 2e-111 short life, PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein (.1), PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0390 [flax] [poplar] zf-FYVE-PHD PF00628 [flax] [poplar] PHD PHD-finger CL0390 [flax] [poplar] PF12165 [flax] [poplar] Alfin Alfin
Representative CDS sequence Show only first row Show all	>Lus10026269 pacid=23156528 polypeptide=Lus10026269 locus=Lus10026269.g ID=Lus10026269.BGIv1.0 annot-version=v1.0 ATGGAGGGGATACCGCACCATGTACCTCGAACTGTAGAAGAGGTCTTTAGCGACTTCAAAGGCAGACGCGCTGGATTGATCAAAGCTCTCACTATGGATG TTGAGAAGTTTTACCAGCAGTGTGACCCTGAGAAGGAGAACCTGTGTCTTTATGGACTTCCAAATGAGAACTGGGAAGTGAATTTGCCCGTTGAGGAAGT ACCACCTGAGCTTCCTGAGCCTGCGTTAGGCATTAATTTTGCTAGAGATGGGATGCAAGAGAAGGATTGGTTGTCACTTGTTGCAGTTCACAGTGATTCA TGGTTGCTTGCTGTTGCCTTTTACTTTGGAGCACGTTTTGGGTTTGGTAAGAACGAAAGGAAGAGACTTTTTCAGATGATAAATGAAGTCCCCACAATAT TTGAAGTAGTGTCAGGGAACGCTAAGCAACCTAAAGACCATTCTGCAACGCATAACAACAGCGGTAAAAGCAAATCAAGTGCGAAGATGCAATCTCGGCA CCCGGAACCCCTTACAAAGACGATGAAGATGACTCCACCGCCACCAAAGGAGGAAGATGAGAGCGGGGAAGAGGATGAAGAGGATGATGAACAAGGTGCA ACATGTGGGGCATGTGGTGAAAGCTACGGAACAGACGAATTCTGGATCTGCTGCGACATATGTGAGAGATGGTTTCACGGGAAATGCGTGAAGATTACTC CGGCAAAGGCGGAGCACATCAAGCAGTATAAATGCCCAGGGTGCAGTGGGAAGAGGGCAAGAGTTTAG
AA sequence Show only first row Show all	>Lus10026269 pacid=23156528 polypeptide=Lus10026269 locus=Lus10026269.g ID=Lus10026269.BGIv1.0 annot-version=v1.0 MEGIPHHVPRTVEEVFSDFKGRRAGLIKALTMDVEKFYQQCDPEKENLCLYGLPNENWEVNLPVEEVPPELPEPALGINFARDGMQEKDWLSLVAVHSDS WLLAVAFYFGARFGFGKNERKRLFQMINEVPTIFEVVSGNAKQPKDHSATHNNSGKSKSSAKMQSRHPEPLTKTMKMTPPPPKEEDESGEEDEEDDEQGA TCGACGESYGTDEFWICCDICERWFHGKCVKITPAKAEHIKQYKCPGCSGKRARV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G02470	Alfin	AL6	alfin-like 6 (.1.2)		Lus10026269 [exp]	0	1
AT4G25550			Cleavage/polyadenylation speci...		Lus10014987 [exp]	2.6	0.8733
AT2G30620			winged-helix DNA-binding trans...		Lus10005535 [exp]	5.9	0.8746
					Lus10029394 [exp]	6.5	0.8763
AT3G55280		RPL23A2, RPL23A...	RIBOSOMAL PROTEIN L23A2, ribos...		Lus10030325 [exp]	8.3	0.8837
AT2G30260		U2B''	U2 small nuclear ribonucleopro...		Lus10042240 [exp]	9.7	0.8815
AT1G65650		UCH2	Peptidase C12, ubiquitin carbo...		Lus10031062 [exp]	13.2	0.8741
AT4G11080		3xHMG-box1	3xHigh Mobility Group-box1, HM...		Lus10023091 [exp]	13.9	0.8633
AT3G12380		ATARP5	actin-related protein 5 (.1.2)		Lus10023400 [exp]	15.9	0.8451
AT2G15430		NRPE3A, NRPD3, ...	DNA-directed RNA polymerase fa...		Lus10002823 [exp]	16.7	0.8751
AT3G12380		ATARP5	actin-related protein 5 (.1.2)		Lus10040281 [exp]	17.5	0.8360

Compare expression of checked genes

Lus10026269 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.