Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G02480 487 / 6e-153 STI STICHEL, AAA-type ATPase family protein (.1) AT1G14460 466 / 5e-146 AAA-type ATPase family protein (.1) AT4G24790 229 / 1e-62 AAA-type ATPase family protein (.1.2) AT5G45720 213 / 1e-56 AAA-type ATPase family protein (.1.2) AT4G18820 210 / 1e-55 AAA-type ATPase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042401 [exp] 1321 / 0 AT2G02480 1051 / 0.0 STICHEL, AAA-type ATPase family protein (.1) Lus10005422 [exp] 235 / 1e-63 AT4G18820 909 / 0.0 AAA-type ATPase family protein (.1) Lus10015234 [exp] 232 / 7e-63 AT4G18820 934 / 0.0 AAA-type ATPase family protein (.1) Lus10013665 [exp] 228 / 5e-62 AT4G24790 702 / 0.0 AAA-type ATPase family protein (.1.2) Lus10007316 [exp] 230 / 6e-62 AT4G18820 1072 / 0.0 AAA-type ATPase family protein (.1) Lus10029265 [exp] 223 / 1e-59 AT4G18820 1042 / 0.0 AAA-type ATPase family protein (.1) Lus10033035 [exp] 216 / 3e-58 AT4G24790 687 / 0.0 AAA-type ATPase family protein (.1.2) Lus10025689 [exp] 44 / 0.0005 AT1G77470 568 / 0.0 replication factor C 5, EMBRYO DEFECTIVE 2810, replication factor C subunit 3 (.1) Lus10018144 [exp] 44 / 0.0006 AT1G77470 564 / 0.0 replication factor C 5, EMBRYO DEFECTIVE 2810, replication factor C subunit 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G230300 [exp] 768 / 0 AT2G02480 1189 / 0.0 STICHEL, AAA-type ATPase family protein (.1) Potri.003G044900 [exp] 763 / 0 AT2G02480 1147 / 0.0 STICHEL, AAA-type ATPase family protein (.1) Potri.012G091700 [exp] 250 / 6e-69 AT4G24790 656 / 0.0 AAA-type ATPase family protein (.1.2) Potri.015G088100 [exp] 246 / 1e-67 AT4G24790 664 / 0.0 AAA-type ATPase family protein (.1.2) Potri.004G061700 [exp] 221 / 9e-59 AT4G18820 1031 / 0.0 AAA-type ATPase family protein (.1) Potri.011G071300 [exp] 213 / 3e-56 AT4G18820 1047 / 0.0 AAA-type ATPase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0604 [flax] [poplar] post-AAA PF12169 [flax] [poplar] DNA_pol3_gamma3 DNA polymerase III subunits gamma and tau domain III
Representative CDS sequence Show only first row Show all	>Lus10026270 pacid=23156412 polypeptide=Lus10026270 locus=Lus10026270.g ID=Lus10026270.BGIv1.0 annot-version=v1.0 ATGGCGTCAGAGCTGCGAGTTGGCGATCCAAGCAGCCTCCATCTTCGCAAGGAGCTCACTCAAATCAGGAAGGCATCTCGCGTCCTCCGTGACCCTGCTA CCACCACCCTCACTTCCTCCTCCTCCTCCTTCTACAGACCTCCTCTCCCTAATCCTTCTTCCTCTTCCCCTAGATCTGCTCCTCCTCCTCTTCCTAACCC TCCTTCCAACCGCCCAGTCTTCCTCCACAACTGGCAGATTCCTCATAATCCTGATCCCGCCGCCGATTACTATTACCCCGATGACAACAACAGCCTCGAC GACGACAATGACGACGAAGCTGCCGCAGCTCTGGACAGCGATGCTCATCTCTCTTCCTCCTCCGCCACCGCTTCCAACATTCTACGATGCCGCGACGCTG CTGCTGCTCTCGTCTCCCCTTCCATTACTCTCAAGAAGCATCATCGGAGTGGTAAGAAAACCGTCCCTCTTTCTGATGTTTTGTCTAGATACCAGCAGCA CCGACGCCACCACCCTAACCTCAACAATTTGACTCCACTACTTAGAACAACGAATCGTCGTCCTTCGCTGGACCATTACTCCGATTACACAACTGACGAC TGCACTCATTCCGAGGATTTGTTGAGGAAGTTCTCTTCCTCTGCGTCCCCGTTGCTTTTGAAGCTCAAGCATAAGAACTGGTCCCGTTCCCCGTCTGCAT TCATGAGGAAGACGACCAGTGTAAAGGATCACGACTCTTCTTACTCCTATAACACCCCTGCATTGTCCACTAGCTCCTACAATAGGTACTACAATCGAAA CCCTAGTACCGTTGGATCCTGGGATGCCACCACCGCTACTTCCCTCAACGATGGGGATCATCACGATGATGATGACAATGAAGATGATGACCATTTGGAT CATTTGCCTGGTAGCAGAGGGTGTGGTATCCCTTGCTACTGGTCCAAGAAGGCTGCTAGTTGTTGCTCCCCTTCTCTTTCCGATACTTTGAGGAGGAAAG GAAGCCGCATTCTCTGCGGTAGTCAGTCCATCGATTGCCCCTGTCTATCTTTTCCAGGGTCCTCGTGGAACTGGGAAAACATCAGCAGCCAGAATCTTCA GCTCTGTCAAGCACCCCAGTCGGGCTCTTCACACTTTCAGGTCTTTCTCATTGATGAATGCCACTTGTTGCCTTCTAAGTTGTGGCTGGCATTCCTCAAG TTTCTTGAAGAGCCACCTCAGAGAGTTGTATTCATATTTATAACGACGGATCCTGATAATGTGCCCCGGACCGTGCAATCGCGATGCCAGAAGTACCTAT TTAACAAAATTAAAGATGCAGATATCATATCAAGATTGAGGAACATTTCTGCAGAAGAGAATCTGAACGTTGAGTCAGATGCACTGGATCTTATAGCTTT AAACGCAGATGGGTCACTTCGAGATGCTGAGACAATGTTGGATCAGTTGAGTCTGTTAGGAAAGAAGATAACTATATCGTTGGTGAATGAACTTGTTGGA GTTGTCTCAGACGAGAAATTACTGGAACTCTTGGAGTTGGCGTTGTTATCAGACACGGCTGAAACGGTGAAAAGAGCCAGGGATTTGATGGACTCGGGTG TTGATCCAATGGTATTGATGTCTCAAATGGCTACCCTTATAATGGACATCATTGCTGGAACTGGCAACAGGGGAGATGGCAGATGGGGCAATTCATTTTT TGGTGGAAGAAACTTGACTGAAGCAGAAGTGGGAAGATTGAAGAATTCCTTGAAGCTTCTCTCCGAGGCCGAAAAGCAACTGCGGTTTTCCAGTGATCGT TCAACATGGTTCACCGCAACGCTTTTACAGCTTGGGTCAGTTCCTTCACTAGAGATCACACACTCAAGCAGCAGTAAAAGGGGTAGCTCCAGGACCACTG ATGAAGATCCTTCAAGTGTCTCAAGGGAAGTATCTGCTTACAGACGTAAATCAGATCATCAGTTTTTGCAACGAAGATCAAGTTCACCTGCTTCCTTGTA TGATGTAATAAACGGAAGTTCCTGCCATCTTGATGGATCTGAGTTGAATGGCAAAAGCCCTCATAGTCGTTTGACGGTTGCCCATAGCTCATGTAATTCA CAGGATGAGAGCATGTTTGGTGATACACCATCTCAACTTAGAGACTCAGAAAAGTTGGATATTATCTGGGAGAAGTGCATCGAAAAGTGTCATTCAAAGA CTCTGAGGCAGCTGCTACATTCTCATGGGAAGATGTTGTCTATAGCAGAACTTGAAGGCGTGCTAGTTGTGTATATTGCCTTTTTCGATGAAGAGATTAA AGCCAGAGCTGAAAGATTTATGAGCAGTATCACAAACTCCATAGAAATGGTCTTGAGACGCAATGTTGAAGTTAAAATTATCCTGGTGTCCGATGGTGAC CTTCTGCTGAATGGGTCATTTGAAAGTGGTTTACGCTCTGGAAAATTGTCAGAAGCTGGTCGGAAAGAGGCAAATCACTCGAATGCTGTGGATCGTTATT TGGAGTTACATTCGCAGCAAGAGTCTCGTAGAATGTCTAGAGGAGAATTTAGTGGCCCAGAAAGCAAGCATAAGACAGGTGAGCACTCTAAGTCATCAAC TATGTTGGATGGTACAGTTCAATCAGATGCCCTGTCACCAGAATTGCTTCCCGAAGCTGGTGTCGTAGACACTGAGTTGAAAGAAACCGTGGCAGAGTTA CCGATGCAGAGAATAGAATCTATCATCCGGGAGCAGAGGCTAGAAACTGCATGGTTACAGGCTGCAGAGAAAGGCACACCCGGAACTTTAAGTCGGCTGA AACCGGAGAAGAATCAGGTGCTGCCGCAAGAGGGAATATACCACAATCAAAGTCAAAAGGAAGTTTCAAATTCGACGGGGTTGTCTCCCCATCAATGGGA AGATGAACTAAATCATGAACTGAAGGTTCTAAAGATGCAGGATGCAAAGGTGGTCGTAAAGGATCAAATTGGTAGAAGGGCTGGCCACAATCCAATGTCA CCTAGCATGTTGCATGATAATAGCATGTCAAAGAAAGAAAGCCTTGGGGGGTACGATTCAAGTACGGCGGGCAGAGGTTGCAGCAGGCTTTTCTGCTGGA ATACGCAGAAATCTCAGAGAGGAAAGGGGAAAGTTGCGATTGCAAGATCTCGACGGAGAGTTGGAGGATTTTCATTGTTTGGGGAGTGCGGAAAGCAAAA TAAGAGTGAGAACAGGGGTAGAAGAAGGTAG
AA sequence Show only first row Show all	>Lus10026270 pacid=23156412 polypeptide=Lus10026270 locus=Lus10026270.g ID=Lus10026270.BGIv1.0 annot-version=v1.0 MASELRVGDPSSLHLRKELTQIRKASRVLRDPATTTLTSSSSSFYRPPLPNPSSSSPRSAPPPLPNPPSNRPVFLHNWQIPHNPDPAADYYYPDDNNSLD DDNDDEAAAALDSDAHLSSSSATASNILRCRDAAAALVSPSITLKKHHRSGKKTVPLSDVLSRYQQHRRHHPNLNNLTPLLRTTNRRPSLDHYSDYTTDD CTHSEDLLRKFSSSASPLLLKLKHKNWSRSPSAFMRKTTSVKDHDSSYSYNTPALSTSSYNRYYNRNPSTVGSWDATTATSLNDGDHHDDDDNEDDDHLD HLPGSRGCGIPCYWSKKAASCCSPSLSDTLRRKGSRILCGSQSIDCPCLSFPGSSWNWENISSQNLQLCQAPQSGSSHFQVFLIDECHLLPSKLWLAFLK FLEEPPQRVVFIFITTDPDNVPRTVQSRCQKYLFNKIKDADIISRLRNISAEENLNVESDALDLIALNADGSLRDAETMLDQLSLLGKKITISLVNELVG VVSDEKLLELLELALLSDTAETVKRARDLMDSGVDPMVLMSQMATLIMDIIAGTGNRGDGRWGNSFFGGRNLTEAEVGRLKNSLKLLSEAEKQLRFSSDR STWFTATLLQLGSVPSLEITHSSSSKRGSSRTTDEDPSSVSREVSAYRRKSDHQFLQRRSSSPASLYDVINGSSCHLDGSELNGKSPHSRLTVAHSSCNS QDESMFGDTPSQLRDSEKLDIIWEKCIEKCHSKTLRQLLHSHGKMLSIAELEGVLVVYIAFFDEEIKARAERFMSSITNSIEMVLRRNVEVKIILVSDGD LLLNGSFESGLRSGKLSEAGRKEANHSNAVDRYLELHSQQESRRMSRGEFSGPESKHKTGEHSKSSTMLDGTVQSDALSPELLPEAGVVDTELKETVAEL PMQRIESIIREQRLETAWLQAAEKGTPGTLSRLKPEKNQVLPQEGIYHNQSQKEVSNSTGLSPHQWEDELNHELKVLKMQDAKVVVKDQIGRRAGHNPMS PSMLHDNSMSKKESLGGYDSSTAGRGCSRLFCWNTQKSQRGKGKVAIARSRRRVGGFSLFGECGKQNKSENRGRRR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G02480		STI	STICHEL, AAA-type ATPase famil...		Lus10026270 [exp]	0	1
AT5G05730		JDL1, WEI2, TRP...	WEAK ETHYLENE INSENSITIVE 2, T...		Lus10014842 [exp]	3.9	0.9042
AT4G28230			unknown protein		Lus10018539 [exp]	6.0	0.9201
AT1G70280			NHL domain-containing protein ...		Lus10029176 [exp]	8.1	0.9055
AT5G49160		MET2, DMT1, DMT...	METHYLTRANSFERASE I, METHYLTRA...		Lus10004295 [exp]	8.7	0.9234
AT3G16490		IQD26	IQ-domain 26 (.1)		Lus10043033 [exp]	8.7	0.9209
AT5G54970			unknown protein		Lus10043108 [exp]	9.5	0.9126
AT5G46280		MCM3	MINICHROMOSOME MAINTENANCE 3, ...		Lus10015267 [exp]	11.6	0.9206
AT1G77720		PPK1	putative protein kinase 1 (.1)		Lus10028085 [exp]	12.0	0.9230
AT2G07690		MCM5	MINICHROMOSOME MAINTENANCE 5, ...		Lus10019592 [exp]	15.9	0.9219
AT1G76160		SKS5	SKU5 similar 5 (.1)		Lus10030045 [exp]	17.2	0.8927

Compare expression of checked genes

Lus10026270 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.