Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G02500 371 / 3e-129 MCT, ATMEPCT, ISPD 2-C-METHYL-D-ERYTHRITOL 4-PHOSPHATE CYTIDYLTRANSFERASE, Nucleotide-diphospho-sugar transferases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042400 [exp] 547 / 0 AT2G02410 377 / 4e-127 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G230200 [exp] 413 / 1e-145 AT2G02500 381 / 1e-133 2-C-METHYL-D-ERYTHRITOL 4-PHOSPHATE CYTIDYLTRANSFERASE, Nucleotide-diphospho-sugar transferases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0110 [flax] [poplar] GT-A PF01128 [flax] [poplar] IspD 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase
Representative CDS sequence Show only first row Show all	>Lus10026271 pacid=23156540 polypeptide=Lus10026271 locus=Lus10026271.g ID=Lus10026271.BGIv1.0 annot-version=v1.0 ATGTCGATGATTAATCTTCAACTTCGTCCTCTCTCTAATCCCACAACCACTAATCATTCTTCCTTAGCTACGCCGGTGGCGGTGGCGGTGGCGGCGGCGG CTCCTTCTTCCAATCTCTCCTTCGCTTCTACTGCTACTGCCTCCGCCAATTGCCTTAAATCCACTTCCTTTCCAGGCAAGTCTAAAGCTTTAACCTTTTC CATCTCCCCTCTACTACTAGTATTAATTTTTTCATTTCCTCCATTTTCAGGTTGCAAAATCATTGCCACCCACAAGCCAAGATTCGCTCTCTCTCCCATC AGATGTTCCGCTACCCCGCTGCAAAATGGCTCCGGAGCTGTGAAAGAGCGGAGTGTTTCAGTTATTCTGTTAGCTGGAGGACAAGGCAAAAGAATGGGTG CCGGCATGCCAAAGCAGTACCTACCTCTTCTTGGTCAATCAATTGCTCTCTACAGTTTCTATACGTTCTCAGAGATGATTGAAGTGAAGGAAATTGTTGT AGTCTGTGATCCATCCTACAGTGACGTCTTTGAAGATGCCGAGGAAGAAATCGACATAGACCTTAAATTTGCCCTCCCTGGGAAGGAAAGACAGGATTCC GTATACAGCGGTCTTCAGGAGATAGATCCTAGCTCCGAGCTTGTCTGCATCCATGATTCTGCAAGACCTCTGGTTTCGCCTGCTGATATAAGGAAGGTGA TCAAGGATGCATCAGTGAACGGAGCAGCTGTGCTGGGTGTTCCTGTCAAAGCCACTATCAAGGAGGCAGATAGTGACTCATTCGTAGTAAAAACTCTTGA CCGCAAGACACTGTGGGAGATGCAAACGCCGCAGGTGATCAAGCCAGAAGTGCTCAAGAGAGGATTTGAGCTTGTAAATAGGGAATGCCTTGAGGTGACG GATGACGTTTCAATAGTGGAGCATCTGAAACATCCAGTTTTCGTCACAGAAGGATCGTACACTAACATCAAGGTTACAACCCCAGATGATATGCTGCTTG CAGAGAGGATTCTGACTATGGATTGA
AA sequence Show only first row Show all	>Lus10026271 pacid=23156540 polypeptide=Lus10026271 locus=Lus10026271.g ID=Lus10026271.BGIv1.0 annot-version=v1.0 MSMINLQLRPLSNPTTTNHSSLATPVAVAVAAAAPSSNLSFASTATASANCLKSTSFPGKSKALTFSISPLLLVLIFSFPPFSGCKIIATHKPRFALSPI RCSATPLQNGSGAVKERSVSVILLAGGQGKRMGAGMPKQYLPLLGQSIALYSFYTFSEMIEVKEIVVVCDPSYSDVFEDAEEEIDIDLKFALPGKERQDS VYSGLQEIDPSSELVCIHDSARPLVSPADIRKVIKDASVNGAAVLGVPVKATIKEADSDSFVVKTLDRKTLWEMQTPQVIKPEVLKRGFELVNRECLEVT DDVSIVEHLKHPVFVTEGSYTNIKVTTPDDMLLAERILTMD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G02500		MCT, ATMEPCT, I...	2-C-METHYL-D-ERYTHRITOL 4-PHOS...		Lus10026271 [exp]	0	1
AT1G35670		CPK11, ATCDPK2,...	calcium-dependent protein kina...		Lus10039623 [exp]	2.4	0.7652
AT1G18440			Peptidyl-tRNA hydrolase family...		Lus10032480 [exp]	6.6	0.7890
AT5G58240		FHIT	FRAGILE HISTIDINE TRIAD (.1.2)		Lus10019126 [exp]	18.9	0.7823
AT2G42010		PLDBETA1	phospholipase D beta 1 (.1)		Lus10026375 [exp]	22.2	0.7323
AT3G01900		CYP94B2	"cytochrome P450, family 94, s...		Lus10041562 [exp]	47.2	0.7056
AT3G07570			Cytochrome b561/ferric reducta...		Lus10012305 [exp]	50.3	0.7386
AT5G28540		BIP1	heat shock protein 70 (Hsp 70)...		Lus10023016 [exp]	52.1	0.7502
					Lus10043270 [exp]	55.7	0.7557
AT1G28100			unknown protein		Lus10002573 [exp]	73.7	0.7346
AT3G14110		FLU	FLUORESCENT IN BLUE LIGHT, Tet...		Lus10037686 [exp]	77.7	0.6908

Compare expression of checked genes

Lus10026271 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.