Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G02410 371 / 6e-131 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042400 [exp] 518 / 0 AT2G02410 377 / 4e-127 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G046600 [exp] 413 / 4e-147 AT2G02410 375 / 2e-131 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0280 [flax] [poplar] PIN PF05991 [flax] [poplar] NYN_YacP YacP-like NYN domain
Representative CDS sequence Show only first row Show all	>Lus10026272 pacid=23156497 polypeptide=Lus10026272 locus=Lus10026272.g ID=Lus10026272.BGIv1.0 annot-version=v1.0 ATGATGGCCAAATCCAAGAAGCCTTCCTCTTCCCATACCCCCTCCCAGGGCTCCCCCGACCCACCTCCCAGAATTACATCAAATGTCAAGCAGAATTTGC AGTTTCTCAAGCTTTGGAAGGAACTTGAAAAGCGCAGATCTTCCACTCCTAGGCCTGCTACAAGTTACCGCAGAAAGAAGGTGGAGAAGGAAATCGTTCC TGAAGATACGCAGGAGATTTATCGTGATCCAACCTTCACTCTCTACCACACAAACCACATGCCTAATACTGCTTTCCCAGTCTTGCTTGTTGATGGCTAT AACGTATGTGGCTACTGGATTAAACTTAAAAAACACTTCATGAGTGGAAGGCTTGACATCGCTCGCCAGAAGCTAGTCGACGAACTTATAGCCTTCAGTG TGCATAAAGAGGTGAAAGTGGTAGTAGTCTTTGATGCCATGATGTCAGGGCTGCCCACGCACAAGGAAACTTTTGCTTGTGTTGATATTATTTACTCGGG TGAAACATGTGCCGACTCATGGATTGAAAGGGAGGTTATGTGCTTGAGGCAAGATGGCTGCCCCAAAGTGTGGGTTGTGACATCGGATCATAAGCAACAA GACGCTGCACATGGAGCGGGAGCCTTTGTTTGGAGTTGCAAAGCCTTGGTTTCTGAGATTAAGGCAGCGCAAAAGGAGGTGGATATGATGATTCAAGAGC TAAGGCCAACTTCTTTTCAAGGGAAACTGCTAAAGCACAACCTTAACTCAGAAGTAGTGGATGCTCTCAAGGACTTGAGAAACAAGCTGTACGAGAATGA GCGCAAAAAGTAG
AA sequence Show only first row Show all	>Lus10026272 pacid=23156497 polypeptide=Lus10026272 locus=Lus10026272.g ID=Lus10026272.BGIv1.0 annot-version=v1.0 MMAKSKKPSSSHTPSQGSPDPPPRITSNVKQNLQFLKLWKELEKRRSSTPRPATSYRRKKVEKEIVPEDTQEIYRDPTFTLYHTNHMPNTAFPVLLVDGY NVCGYWIKLKKHFMSGRLDIARQKLVDELIAFSVHKEVKVVVVFDAMMSGLPTHKETFACVDIIYSGETCADSWIEREVMCLRQDGCPKVWVVTSDHKQQ DAAHGAGAFVWSCKALVSEIKAAQKEVDMMIQELRPTSFQGKLLKHNLNSEVVDALKDLRNKLYENERKK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G02410			unknown protein		Lus10026272 [exp]	0	1
AT1G66140	C2H2ZnF	ZFP4	zinc finger protein 4 (.1)		Lus10030764 [exp]	1.7	0.8342
AT4G19070			Putative membrane lipoprotein ...		Lus10015450 [exp]	2.2	0.8552
AT1G11340			S-locus lectin protein kinase ...		Lus10013246 [exp]	4.4	0.7980
AT1G60430		ARPC3	actin-related protein C3 (.1.2...		Lus10018909 [exp]	4.5	0.8377
AT5G18610			Protein kinase superfamily pro...		Lus10041426 [exp]	6.9	0.8304
AT1G70100			unknown protein		Lus10010725 [exp]	7.3	0.8272
AT5G59610			Chaperone DnaJ-domain superfam...		Lus10016510 [exp]	8.9	0.8296
AT1G05170			Galactosyltransferase family p...		Lus10020042 [exp]	8.9	0.8018
AT4G28600		NPGR2	no pollen germination related ...		Lus10011793 [exp]	11.5	0.8107
AT3G05000			Transport protein particle (TR...		Lus10018981 [exp]	12.5	0.8098

Compare expression of checked genes

Lus10026272 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.