Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G02400 461 / 2e-164 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT5G58490 317 / 1e-107 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G51410 229 / 4e-73 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G66800 229 / 4e-73 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G09480 229 / 2e-72 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT4G35420 227 / 3e-72 TKPR1, DRL1 tetraketide alpha-pyrone reductase 1, dihydroflavonol 4-reductase-like1 (.1) AT5G19440 226 / 4e-72 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G09500 223 / 1e-70 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) AT1G09510 221 / 4e-70 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G09490 219 / 2e-69 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042399 [exp] 650 / 0 AT2G02400 457 / 7e-163 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10026385 [exp] 308 / 4e-104 AT5G58490 533 / 0.0 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10041651 [exp] 240 / 4e-77 AT1G15950 532 / 0.0 IRREGULAR XYLEM 4, cinnamoyl coa reductase 1 (.1.2) Lus10009955 [exp] 232 / 2e-74 AT1G51410 548 / 0.0 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10024068 [exp] 234 / 4e-73 AT1G15950 534 / 0.0 IRREGULAR XYLEM 4, cinnamoyl coa reductase 1 (.1.2) Lus10002300 [exp] 224 / 5e-71 AT5G19440 423 / 2e-149 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10026070 [exp] 223 / 8e-71 AT5G19440 419 / 4e-148 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10024138 [exp] 222 / 2e-70 AT2G33590 420 / 2e-148 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10002302 [exp] 219 / 2e-69 AT5G19440 413 / 2e-145 NAD(P)-binding Rossmann-fold superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G230900 [exp] 488 / 5e-175 AT2G02400 493 / 3e-177 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.009G076300 [exp] 296 / 3e-99 AT5G58490 511 / 0.0 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.005G257700 [exp] 261 / 7e-85 AT2G33590 400 / 4e-139 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.002G004100 [exp] 241 / 8e-78 AT2G33590 438 / 1e-155 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.001G045000 [exp] 228 / 8e-73 AT1G15950 484 / 3e-173 IRREGULAR XYLEM 4, cinnamoyl coa reductase 1 (.1.2) Potri.001G045500 [exp] 226 / 5e-72 AT1G15950 505 / 0.0 IRREGULAR XYLEM 4, cinnamoyl coa reductase 1 (.1.2) Potri.001G256400 [exp] 226 / 7e-72 AT5G19440 552 / 0.0 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.008G138600 [exp] 225 / 2e-71 AT4G35420 535 / 0.0 tetraketide alpha-pyrone reductase 1, dihydroflavonol 4-reductase-like1 (.1) Potri.001G046400 [exp] 224 / 3e-71 AT1G15950 510 / 0.0 IRREGULAR XYLEM 4, cinnamoyl coa reductase 1 (.1.2) Potri.009G057500 [exp] 224 / 4e-71 AT5G19440 444 / 1e-157 NAD(P)-binding Rossmann-fold superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF01370 [flax] [poplar] Epimerase NAD dependent epimerase/dehydratase family
Representative CDS sequence Show only first row Show all	>Lus10026273 pacid=23156574 polypeptide=Lus10026273 locus=Lus10026273.g ID=Lus10026273.BGIv1.0 annot-version=v1.0 ATGGGATCATCGTCCAACAATATCAAAGACGCTCCAGTGTGCGTCACTGGCGCCAACGGCTCCATCGGCTCCTGGGTGGTCCGAACCCTCCTCGAAACCG GTTACACCCAAATCCATGGGTCCATCTACCCAGGCTCCGACGCTTCCCACCTCTTCCAACTCCCACGCGCCACCCCTGACCGCCTCAAAATCTTCCACGC CGACCTCCTCGACACCCACGCACTCTCCGCCGCCATCTCCGGCTGCCGGGGAGTCTTCCACGTCGCATCCCCTTGCTCCCTCGAAGACCCCGTCGATCCC GAACGCGATCTCATCCTCCCCGCCGTCCAAGGCACTCTCCACGTCCTTCAATCCGCCTCCCGCAATCCCGACCTCTCCCGCGTCGTCCTCACCTCTTCCA TCTCCGCCTTGGTCCCAAACCCTACTTGGCCGTGCGGAAACGTCTTCGACGAGTCCTCCTGGACCGATCTCGATTACTGCAGGTCCCGCCAGAAATGGTA TCCCGTGTCCAAGACGCTAGCGGAGAAGGCTGCGTGGGAGTTTGCGGAGAAGAATGGGGTGGATTTGGTGACTATTCATCCAGCTACGTGTTTGGGTCCG TTGTTGCAGCCAGGTCTCAATGCCAGCACTGCTGTTTTGAAACAGTTGCTGGAAGGATCGAAGGACACTCAAGAGTATCACTGGTTGGGAGCCATCCATG TCGAGGATGTGGCTAAGGCGCAAGTTTTGCTATACGAGACTCCTGCTACTTCTGGTAGATATCTCTGCACCAATGGCATCTACCAGTTTCGAGACTTTGC TCACAGGGTTTCCACCCTCTTCCCTAACTTCCCTGTATACAAGTTCCCAGAGGAGACTCAACCTGGTCTAGTTGCCTGCGATGGTGCTGCTAAGAGGTTA ATCGATCTGGGATTGGAGTTCACACCTGTGGAAGATGCTGTACGAGAAACAGTAGAAAGTCTGAAAGCTAGAGGCTTACTTGCTGAGCCACAATCATAG
AA sequence Show only first row Show all	>Lus10026273 pacid=23156574 polypeptide=Lus10026273 locus=Lus10026273.g ID=Lus10026273.BGIv1.0 annot-version=v1.0 MGSSSNNIKDAPVCVTGANGSIGSWVVRTLLETGYTQIHGSIYPGSDASHLFQLPRATPDRLKIFHADLLDTHALSAAISGCRGVFHVASPCSLEDPVDP ERDLILPAVQGTLHVLQSASRNPDLSRVVLTSSISALVPNPTWPCGNVFDESSWTDLDYCRSRQKWYPVSKTLAEKAAWEFAEKNGVDLVTIHPATCLGP LLQPGLNASTAVLKQLLEGSKDTQEYHWLGAIHVEDVAKAQVLLYETPATSGRYLCTNGIYQFRDFAHRVSTLFPNFPVYKFPEETQPGLVACDGAAKRL IDLGLEFTPVEDAVRETVESLKARGLLAEPQS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G02400			NAD(P)-binding Rossmann-fold s...		Lus10026273 [exp]	0	1
AT1G74830			Protein of unknown function, D...		Lus10036656 [exp]	8.3	0.7442
AT2G38290		AMT2;1, ATAMT2	AMMONIUM TRANSPORTER 2;1, ammo...		Lus10041851 [exp]	13.6	0.7095
					Lus10011017 [exp]	19.5	0.6862
AT2G47830			Cation efflux family protein (...		Lus10040922 [exp]	20.5	0.6722
AT3G60330		AHA7	H\(+\)-ATPase 7, H\(+\)-ATPase...		Lus10042903 [exp]	28.4	0.6799
AT3G27027			Protein of unknown function (D...		Lus10032029 [exp]	31.1	0.6788
AT1G20500			AMP-dependent synthetase and l...		Lus10020473 [exp]	34.3	0.6733
AT1G09157			Protein of unknown function (D...		Lus10030466 [exp]	45.8	0.6626
AT2G36540			Haloacid dehalogenase-like hyd...		Lus10019759 [exp]	58.9	0.5777
AT1G55020		ATLOX1, LOX1	ARABIDOPSIS LIPOXYGENASE 1, li...		Lus10001465 [exp]	62.3	0.6276

Compare expression of checked genes

Lus10026273 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.