Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G49720 896 / 0 TSD1, IRX2, DEC, RSW2, OR16PEP, KOR1 ,AtGH9A1 TUMOROUS SHOOT DEVELOPMENT 1, RADIALLY SWOLLEN 2, KORRIGAN 1, KORRIGAN, IRREGULAR XYLEM 2, DEFECTIVE CYTOKINESIS, glycosyl hydrolase 9A1 (.1) AT4G24260 746 / 0 ATGH9A3 ,KOR3 glycosyl hydrolase 9A3 (.1) AT1G65610 624 / 0 ATGH9A2 ,KOR2 KORRIGAN 2, ARABIDOPSIS THALIANA GLYCOSYL HYDROLASE 9A2, Six-hairpin glycosidases superfamily protein (.1) AT1G19940 325 / 2e-104 ATGH9B5 glycosyl hydrolase 9B5 (.1) AT1G75680 322 / 4e-103 ATGH9B7 glycosyl hydrolase 9B7 (.1) AT2G32990 320 / 6e-102 ATGH9B8 glycosyl hydrolase 9B8 (.1) AT4G11050 317 / 6e-100 ATGH9C3 glycosyl hydrolase 9C3 (.1) AT1G02800 313 / 6e-100 ATCEL2 cellulase 2 (.1) AT1G64390 317 / 7e-100 ATGH9C2 glycosyl hydrolase 9C2 (.1) AT4G02290 308 / 8e-98 ATGH9B13 glycosyl hydrolase 9B13 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012162 [exp] 971 / 0 AT5G49720 989 / 0.0 TUMOROUS SHOOT DEVELOPMENT 1, RADIALLY SWOLLEN 2, KORRIGAN 1, KORRIGAN, IRREGULAR XYLEM 2, DEFECTIVE CYTOKINESIS, glycosyl hydrolase 9A1 (.1) Lus10026863 [exp] 619 / 0 AT1G65610 747 / 0.0 KORRIGAN 2, ARABIDOPSIS THALIANA GLYCOSYL HYDROLASE 9A2, Six-hairpin glycosidases superfamily protein (.1) Lus10007584 [exp] 597 / 0 AT5G49720 565 / 0.0 TUMOROUS SHOOT DEVELOPMENT 1, RADIALLY SWOLLEN 2, KORRIGAN 1, KORRIGAN, IRREGULAR XYLEM 2, DEFECTIVE CYTOKINESIS, glycosyl hydrolase 9A1 (.1) Lus10036331 [exp] 478 / 5e-162 AT5G49720 483 / 6e-164 TUMOROUS SHOOT DEVELOPMENT 1, RADIALLY SWOLLEN 2, KORRIGAN 1, KORRIGAN, IRREGULAR XYLEM 2, DEFECTIVE CYTOKINESIS, glycosyl hydrolase 9A1 (.1) Lus10010029 [exp] 469 / 3e-160 AT5G49720 465 / 1e-158 TUMOROUS SHOOT DEVELOPMENT 1, RADIALLY SWOLLEN 2, KORRIGAN 1, KORRIGAN, IRREGULAR XYLEM 2, DEFECTIVE CYTOKINESIS, glycosyl hydrolase 9A1 (.1) Lus10018918 [exp] 406 / 3e-134 AT5G49720 423 / 1e-140 TUMOROUS SHOOT DEVELOPMENT 1, RADIALLY SWOLLEN 2, KORRIGAN 1, KORRIGAN, IRREGULAR XYLEM 2, DEFECTIVE CYTOKINESIS, glycosyl hydrolase 9A1 (.1) Lus10028619 [exp] 397 / 3e-130 AT5G49720 410 / 3e-135 TUMOROUS SHOOT DEVELOPMENT 1, RADIALLY SWOLLEN 2, KORRIGAN 1, KORRIGAN, IRREGULAR XYLEM 2, DEFECTIVE CYTOKINESIS, glycosyl hydrolase 9A1 (.1) Lus10034515 [exp] 327 / 9e-105 AT1G19940 688 / 0.0 glycosyl hydrolase 9B5 (.1) Lus10001833 [exp] 329 / 2e-104 AT1G64390 965 / 0.0 glycosyl hydrolase 9C2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G151700 [exp] 959 / 0 AT5G49720 910 / 0.0 TUMOROUS SHOOT DEVELOPMENT 1, RADIALLY SWOLLEN 2, KORRIGAN 1, KORRIGAN, IRREGULAR XYLEM 2, DEFECTIVE CYTOKINESIS, glycosyl hydrolase 9A1 (.1) Potri.001G078900 [exp] 935 / 0 AT5G49720 904 / 0.0 TUMOROUS SHOOT DEVELOPMENT 1, RADIALLY SWOLLEN 2, KORRIGAN 1, KORRIGAN, IRREGULAR XYLEM 2, DEFECTIVE CYTOKINESIS, glycosyl hydrolase 9A1 (.1) Potri.008G079500 [exp] 657 / 0 AT1G65610 699 / 0.0 KORRIGAN 2, ARABIDOPSIS THALIANA GLYCOSYL HYDROLASE 9A2, Six-hairpin glycosidases superfamily protein (.1) Potri.010G177300 [exp] 636 / 0 AT1G65610 724 / 0.0 KORRIGAN 2, ARABIDOPSIS THALIANA GLYCOSYL HYDROLASE 9A2, Six-hairpin glycosidases superfamily protein (.1) Potri.005G188500 [exp] 432 / 3e-144 AT5G49720 418 / 9e-139 TUMOROUS SHOOT DEVELOPMENT 1, RADIALLY SWOLLEN 2, KORRIGAN 1, KORRIGAN, IRREGULAR XYLEM 2, DEFECTIVE CYTOKINESIS, glycosyl hydrolase 9A1 (.1) Potri.002G023900 [exp] 336 / 2e-108 AT1G19940 672 / 0.0 glycosyl hydrolase 9B5 (.1) Potri.005G237700 [exp] 332 / 8e-107 AT1G19940 678 / 0.0 glycosyl hydrolase 9B5 (.1) Potri.001G356000 [exp] 329 / 9e-106 AT2G32990 736 / 0.0 glycosyl hydrolase 9B8 (.1) Potri.005G115400 [exp] 329 / 1e-105 AT1G19940 586 / 0.0 glycosyl hydrolase 9B5 (.1) Potri.014G157600 [exp] 328 / 5e-105 AT2G32990 800 / 0.0 glycosyl hydrolase 9B8 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0059 [flax] [poplar] 6_Hairpin PF00759 [flax] [poplar] Glyco_hydro_9 Glycosyl hydrolase family 9
Representative CDS sequence Show only first row Show all	>Lus10026275 pacid=23156455 polypeptide=Lus10026275 locus=Lus10026275.g ID=Lus10026275.BGIv1.0 annot-version=v1.0 ATGTACGGTAGGGATCCGTGGGGCGGCCCGCTGGAGATAAACACCGCCGACTCCGCCACCGACGACGACCGCAGCCGCAACCTCAACGACCTCGACCGTG CTGCTCTTTCTCGTCAGTTGGACGAAACTCAGCAGAGCTGGCTGCTTGGCCCCACCGAGCAAAAGAAAAAGAAGAAGTACGTTGATCTGGGCTGCTTCAT CGTTAGCCGTAACATCTTCCTCTGGACATTTGGCACCCTTCTCTCCGCCGCACTCCTCGCCGGCCTCATCGTCATCATCGTCAAGTTCGCCCCTCGCCAC CATAAACCTAAACCCCCGCCTGACAATTACACTCTTGCCCTCAACAAAGCCCTCATGTTCTTCAATGCCCAGCGCTCGGGAAAACTTCCCAAACACAACA ATGTATCCTGGAGAGGTAACTCTGGGTTAAATGATGGCAAATCAGATTCTTCCTCCCTGTTCAAAGATCTGGTCGGGGGCTATTACGACGCTGGTGATGC CATTAAGTTCAATTTCCCTAAATCTTTCGCCATGACCATGCTGAGCTGGAGTGTCATCGAGTACAGTGCCAAGTATGAAGTTGCCGGGGAGCTTAATCAT GTTAAGGAAATTATTAAGTGGGGGACTGATTATTTCCTCAAGACTTTCAACCATACTGCTGATACCATTGACAGAATTGTCGCCCAGGTTGGATCAGGGG ATACTTCCGGGGGCATTACAACTCCAAATGATCATTATTGCTGGGTACGTCCCGAGGACATAAATTACGTGAGACCGGTAACCGAATGCCACAGCTGTTC TGATCTTGCCGCTGAGATGGCTGCTGCCTTAGCATCTGCATCGATTGTCTTCAAAGACAACAAGGCATATTCTCAGAAACTTGTCCATGGTGCCAGAACA CTGTTTAAATTCTCGAGGGACCAGCGTGGAAGATACAGTGCAGGGAGTTCAGAAGCTGCCCAGTTCTATAATTCCACTAGTTACTGGGATGAATTTATTT GGGCTGGAACTTGGTTATACTATGCAACTGGGAATAATAGCTACCTTCAGCTTGCCACTACCCCTGGTCTTGCCAAGCATGCTGGTGCGTTCTGGGGTGG ACCTGACTATGGTGTTTTTAGCTGGGACAACAAGCTTCTTGGTGCTCAGGTGCTTCTTAGCCGTTTGAGACTCTTCCTCAGCCCTGGGTACCCATACGAA GAAATATTGAAGACATTCCACAACCAGACTAGCATCGTCATGTGCTCCTACCTTCCATATTTCACTAGCTTTAACAGAACCAAGGGTGGCATGATTGAGT TAAACCATGGAAGGCCGCAGCCTCTTCAGTATGTAGTCAATGCAGCTTTCCTGGCCACTCTGTATAGTGATTACCTTGAAGCTTCAGATACACCTGGATG GTATTGTGGACCAAATTTCTACTCCACAAAGATCTTGCGTGAATTTGCAAAGACTCAGATTGATTACATCCTGGGCAAAAATCCTCGAAAAATGAGCTAT CTTGTCGGGTTTGGTAAGCGTTTCCCAAAACATGTTCACCACAGAGGAGCTTCAATACCCAAGAGTAAGGTCAAATACAATTGCAAAGGTGGGTGGAGGT GGAGGGATAGACAGAAGCCAAATCCAAATATTCTCGTGGGAGCTATGGTAGCTGGTCCTGACAAACAGGACGGTTTCTGTGATGTTCGGAAAAACTACAA CTACACTGAGCCAACTCTTGCTGGAAATGCAGGATTAGTTGCAGCACTTGTGTCTTTGTCCGGGGAAGGGACGTCAAATATTGACAAGAACACCATTTTC TCTGCAGTTCCCCCCATGTTTCCAACTTCACCTCCACCACCAGCAGCCTGGAAACCATAA
AA sequence Show only first row Show all	>Lus10026275 pacid=23156455 polypeptide=Lus10026275 locus=Lus10026275.g ID=Lus10026275.BGIv1.0 annot-version=v1.0 MYGRDPWGGPLEINTADSATDDDRSRNLNDLDRAALSRQLDETQQSWLLGPTEQKKKKKYVDLGCFIVSRNIFLWTFGTLLSAALLAGLIVIIVKFAPRH HKPKPPPDNYTLALNKALMFFNAQRSGKLPKHNNVSWRGNSGLNDGKSDSSSLFKDLVGGYYDAGDAIKFNFPKSFAMTMLSWSVIEYSAKYEVAGELNH VKEIIKWGTDYFLKTFNHTADTIDRIVAQVGSGDTSGGITTPNDHYCWVRPEDINYVRPVTECHSCSDLAAEMAAALASASIVFKDNKAYSQKLVHGART LFKFSRDQRGRYSAGSSEAAQFYNSTSYWDEFIWAGTWLYYATGNNSYLQLATTPGLAKHAGAFWGGPDYGVFSWDNKLLGAQVLLSRLRLFLSPGYPYE EILKTFHNQTSIVMCSYLPYFTSFNRTKGGMIELNHGRPQPLQYVVNAAFLATLYSDYLEASDTPGWYCGPNFYSTKILREFAKTQIDYILGKNPRKMSY LVGFGKRFPKHVHHRGASIPKSKVKYNCKGGWRWRDRQKPNPNILVGAMVAGPDKQDGFCDVRKNYNYTEPTLAGNAGLVAALVSLSGEGTSNIDKNTIF SAVPPMFPTSPPPPAAWKP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G49720		TSD1, IRX2, DEC...	TUMOROUS SHOOT DEVELOPMENT 1, ...		Lus10026275 [exp]	0	1
AT4G14145			unknown protein		Lus10040412 [exp]	1.4	0.7855
AT1G20693		HMGBETA1, NFD2,...	NUCLEOSOME/CHROMATIN ASSEMBLY ...		Lus10016025 [exp]	2.4	0.8065
AT1G68050		ADO3, FKF1	"flavin-binding, kelch repeat,...		Lus10029002 [exp]	3.7	0.7556
AT3G51880		AtHMGB1, NFD1, ...	NUCLEOSOME/CHROMATIN ASSEMBLY ...		Lus10028298 [exp]	5.2	0.7854
AT1G67623			F-box family protein (.1)		Lus10038709 [exp]	5.5	0.7622
AT5G12200		PYD2	pyrimidine 2 (.1)		Lus10036064 [exp]	6.6	0.7781
AT5G38600			Proline-rich spliceosome-assoc...		Lus10003067 [exp]	8.2	0.6993
AT3G49060			U-box domain-containing protei...		Lus10027490 [exp]	10.2	0.6844
AT3G10540			3-phosphoinositide-dependent p...		Lus10017448 [exp]	11.1	0.6771
AT3G06080		TBL10	TRICHOME BIREFRINGENCE-LIKE 10...		Lus10003734 [exp]	12.4	0.6892

Compare expression of checked genes

Lus10026275 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.