Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G16900 135 / 4e-36 Arabidopsis phospholipase-like protein (PEARLI 4) family (.1), Arabidopsis phospholipase-like protein (PEARLI 4) family (.2), Arabidopsis phospholipase-like protein (PEARLI 4) family (.3) AT4G35110 131 / 5e-34 Arabidopsis phospholipase-like protein (PEARLI 4) family (.1), Arabidopsis phospholipase-like protein (PEARLI 4) family (.2), Arabidopsis phospholipase-like protein (PEARLI 4) family (.3), Arabidopsis phospholipase-like protein (PEARLI 4) family (.4) AT4G38550 105 / 5e-24 Arabidopsis phospholipase-like protein (PEARLI 4) family (.1) AT2G20960 105 / 6e-24 PEARLI4 Arabidopsis phospholipase-like protein (PEARLI 4) family (.1) AT5G11140 95 / 4e-22 Arabidopsis phospholipase-like protein (PEARLI 4) family (.1) AT4G38560 96 / 5e-21 Arabidopsis phospholipase-like protein (PEARLI 4) family (.1), Arabidopsis phospholipase-like protein (PEARLI 4) family (.2) AT2G20950 96 / 6e-21 Arabidopsis phospholipase-like protein (PEARLI 4) family (.1), Arabidopsis phospholipase-like protein (PEARLI 4) family (.2), Arabidopsis phospholipase-like protein (PEARLI 4) family (.3), Arabidopsis phospholipase-like protein (PEARLI 4) family (.4) AT2G16860 47 / 1e-05 GCIP-interacting family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042396 [exp] 603 / 0 AT4G35110 190 / 6e-56 Arabidopsis phospholipase-like protein (PEARLI 4) family (.1), Arabidopsis phospholipase-like protein (PEARLI 4) family (.2), Arabidopsis phospholipase-like protein (PEARLI 4) family (.3), Arabidopsis phospholipase-like protein (PEARLI 4) family (.4) Lus10012164 [exp] 129 / 2e-32 AT2G16900 122 / 1e-30 Arabidopsis phospholipase-like protein (PEARLI 4) family (.1), Arabidopsis phospholipase-like protein (PEARLI 4) family (.2), Arabidopsis phospholipase-like protein (PEARLI 4) family (.3) Lus10007582 [exp] 125 / 9e-31 AT4G35110 120 / 2e-29 Arabidopsis phospholipase-like protein (PEARLI 4) family (.1), Arabidopsis phospholipase-like protein (PEARLI 4) family (.2), Arabidopsis phospholipase-like protein (PEARLI 4) family (.3), Arabidopsis phospholipase-like protein (PEARLI 4) family (.4) Lus10028463 [exp] 68 / 4e-12 AT3G50930 340 / 2e-111 cytochrome BC1 synthesis (.1) Lus10041918 [exp] 68 / 7e-12 AT3G50930 383 / 2e-126 cytochrome BC1 synthesis (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G176100 [exp] 261 / 9e-81 AT2G16900 154 / 3e-42 Arabidopsis phospholipase-like protein (PEARLI 4) family (.1), Arabidopsis phospholipase-like protein (PEARLI 4) family (.2), Arabidopsis phospholipase-like protein (PEARLI 4) family (.3) Potri.009G136400 [exp] 239 / 5e-73 AT2G16900 132 / 7e-35 Arabidopsis phospholipase-like protein (PEARLI 4) family (.1), Arabidopsis phospholipase-like protein (PEARLI 4) family (.2), Arabidopsis phospholipase-like protein (PEARLI 4) family (.3) Potri.004G176200 [exp] 50 / 2e-06 AT2G16860 408 / 2e-144 GCIP-interacting family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05278 [flax] [poplar] PEARLI-4 Arabidopsis phospholipase-like protein (PEARLI 4)
Representative CDS sequence Show only first row Show all	>Lus10026277 pacid=23156583 polypeptide=Lus10026277 locus=Lus10026277.g ID=Lus10026277.BGIv1.0 annot-version=v1.0 ATGGCTGATAATGGAAGGGTCCATCCTGAGTGTGTTAACGCTGACAATCCCTATCATGAATGTGGAGTAGCTTGCCTTGAGAAGATTTCTCAGGGCATCA CTCGAAAGACTAAGAAGAAATCAGGCAGTGGGAGAGGTGTTAAACATGGTCAGCAAATCAGAAGCATGGATGGAGGAAGAAGACTTGCAAATCCAAGTTG TCCAAAAGCTGCAAATCCTTTCCATGAATGTGGCAAATACTGCACTAATAAACCTGCCGGTGAAGCAACTGATAAAGATGCAGGATCCTTCATTCTTGGG GCTCCTGTGAGCATGATAAGGAAAAAGAAGGAAGCTTTGTCTCACCCAAATTCACCTCATGCTAATGTTTCTTCTCCAAAATCACCTTCCTCTATTAAGA AGGCGGTGGAATCAGAAACCAGCCGGTCTACCACCTCATCTCGACAGCAGCCTGAGGAAAGTGATTCTCGAGATGACAAGATCGAAATTCAACCTCACCA ATCAATTCCTGCCTCTGGGATTATAACGTCTTACCTAAACTTTCCTACACACATAGCTCTTCTTGTGGCTTACTCTGTCCGGTTTGCTATCGAACAGCCT GATGGTCCGATTAGCCCATCCAAGGGCAGTTTTACATGCTTTGCTGCGGGTCCCAATGCGACCAAAGAAGAACTCGAACTCAATCTCGATGCTTCATCTC CTAAACCGGATAATACAAACGATCATGAACCAGTTATAAAGACTATGGAGTTCAGCTTTTCTGGCATTTCACGAGTGTCACGTGACAGTGACGACGATGA AGTGCAGTCTGTTATATCAGATTCCTGCGTATCGGTTGGAAAATATCACGTCAGAGCAACCATTGCCTCCATCTTATCCTCGATCTTCCTAAAGTATGGG GACATAGCTGAAAACTGTAGGTTGGAATCAGTTTCAATGCGTGCATATTATCTCGAATGCCTGTGCTCCGTGGTTCAGGAGCTGCAGTCTCTTAACATCA AGCAGCTGACGAAATCCAAAGTGAAAGAACTGCTGGCAGTTCTCAAGGATGTGGAATCAGCAGGGATCGATGTGGAATGGCTGCGAGATGTCCTGAACGA ACTCGCTTTAGCTGTGGAGCTCAACAACCAGCACCAAGCTGCCGAGGCTGCAAAAGCGGAGTGTGATCAGGCAGTAGAATCGGTGAATAAAGAACTTGAA TCCTTGATGGAGGATTTGGTTATAAAAGAGCAGGCAGTTGCAGAAGCCAGATCGAAAGTTGATGAAATGAGGGATCGGTTAAGCCAACTGGAGGCCGAAT CTTCGAAGCTGAGTGAGTCTGTTTCATCTAGTTGGTCGTTGGTGGAAAAGTTCCACTCCAAAACTCTTGCAGATGATATATTGTAA
AA sequence Show only first row Show all	>Lus10026277 pacid=23156583 polypeptide=Lus10026277 locus=Lus10026277.g ID=Lus10026277.BGIv1.0 annot-version=v1.0 MADNGRVHPECVNADNPYHECGVACLEKISQGITRKTKKKSGSGRGVKHGQQIRSMDGGRRLANPSCPKAANPFHECGKYCTNKPAGEATDKDAGSFILG APVSMIRKKKEALSHPNSPHANVSSPKSPSSIKKAVESETSRSTTSSRQQPEESDSRDDKIEIQPHQSIPASGIITSYLNFPTHIALLVAYSVRFAIEQP DGPISPSKGSFTCFAAGPNATKEELELNLDASSPKPDNTNDHEPVIKTMEFSFSGISRVSRDSDDDEVQSVISDSCVSVGKYHVRATIASILSSIFLKYG DIAENCRLESVSMRAYYLECLCSVVQELQSLNIKQLTKSKVKELLAVLKDVESAGIDVEWLRDVLNELALAVELNNQHQAAEAAKAECDQAVESVNKELE SLMEDLVIKEQAVAEARSKVDEMRDRLSQLEAESSKLSESVSSSWSLVEKFHSKTLADDIL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G35110			Arabidopsis phospholipase-like...		Lus10026277 [exp]	0	1
AT4G26060			Ribosomal protein L18ae family...		Lus10027625 [exp]	1.4	0.9618
AT5G61820			unknown protein		Lus10017315 [exp]	2.2	0.9647
AT3G10915			Reticulon family protein (.1.2...		Lus10029041 [exp]	5.5	0.9524
AT5G61820			unknown protein		Lus10017316 [exp]	5.5	0.9614
AT4G18880	HSF	AT-HSFA4A ,HSF ...	ARABIDOPSIS THALIANA HEAT SHOC...		Lus10029269 [exp]	7.3	0.9552
AT2G36020		HVA22J	HVA22-like protein J (.1)		Lus10016974 [exp]	7.7	0.9544
AT3G26380			Melibiase family protein (.1)		Lus10006467 [exp]	7.7	0.9586
AT3G21530			DNAse I-like superfamily prote...		Lus10034003 [exp]	9.6	0.9438
AT3G21630		LYSMRLK1, CERK1	LYSM DOMAIN RECEPTOR-LIKE KINA...		Lus10035302 [exp]	13.1	0.9403
AT2G01350		QPT	quinolinate phoshoribosyltrans...		Lus10018780 [exp]	13.4	0.9485

Compare expression of checked genes

Lus10026277 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.