Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G21120 385 / 1e-133 Protein of unknown function (DUF803) (.1) AT4G38730 376 / 4e-130 Protein of unknown function (DUF803) (.1) AT1G34470 328 / 9e-111 Protein of unknown function (DUF803) (.1) AT1G71900 325 / 5e-110 Protein of unknown function (DUF803) (.1) AT4G09640 310 / 3e-103 Protein of unknown function (DUF803) (.1) AT4G13800 295 / 4e-98 Protein of unknown function (DUF803) (.1) AT3G23870 282 / 3e-93 Protein of unknown function (DUF803) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042393 [exp] 363 / 1e-125 AT4G38730 424 / 2e-150 Protein of unknown function (DUF803) (.1) Lus10012716 [exp] 347 / 2e-118 AT2G21120 444 / 1e-157 Protein of unknown function (DUF803) (.1) Lus10010893 [exp] 325 / 4e-110 AT2G21120 416 / 8e-147 Protein of unknown function (DUF803) (.1) Lus10006072 [exp] 312 / 3e-105 AT1G71900 503 / 0.0 Protein of unknown function (DUF803) (.1) Lus10015480 [exp] 281 / 1e-92 AT1G71900 548 / 0.0 Protein of unknown function (DUF803) (.1) Lus10019952 [exp] 263 / 1e-85 AT1G71900 454 / 4e-161 Protein of unknown function (DUF803) (.1) Lus10022549 [exp] 224 / 1e-70 AT4G13800 408 / 2e-143 Protein of unknown function (DUF803) (.1) Lus10016636 [exp] 218 / 4e-69 AT3G23870 312 / 2e-106 Protein of unknown function (DUF803) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G168900 [exp] 423 / 1e-148 AT2G21120 488 / 6e-175 Protein of unknown function (DUF803) (.1) Potri.001G305700 [exp] 352 / 2e-120 AT2G21120 442 / 9e-157 Protein of unknown function (DUF803) (.1) Potri.019G001100 [exp] 348 / 4e-119 AT2G21120 433 / 5e-153 Protein of unknown function (DUF803) (.1) Potri.001G253100 [exp] 347 / 3e-118 AT1G34470 379 / 6e-131 Protein of unknown function (DUF803) (.1) Potri.009G047400 [exp] 338 / 6e-115 AT1G34470 414 / 5e-145 Protein of unknown function (DUF803) (.1) Potri.001G318700 [exp] 312 / 6e-105 AT4G13800 379 / 8e-132 Protein of unknown function (DUF803) (.1) Potri.013G114100 [exp] 312 / 7e-105 AT1G71900 439 / 4e-155 Protein of unknown function (DUF803) (.1) Potri.003G009700 [exp] 310 / 5e-104 AT1G71900 463 / 9e-165 Protein of unknown function (DUF803) (.1) Potri.019G084600 [exp] 309 / 1e-103 AT1G71900 423 / 5e-149 Protein of unknown function (DUF803) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0184 [flax] [poplar] DMT PF05653 [flax] [poplar] Mg_trans_NIPA Magnesium transporter NIPA
Representative CDS sequence Show only first row Show all	>Lus10026280 pacid=23156402 polypeptide=Lus10026280 locus=Lus10026280.g ID=Lus10026280.BGIv1.0 annot-version=v1.0 ATGGGAGTTTCGGAGAATACGAAGGGGCTGATATTGGCTGTTGCTTCTAGTGCGTTTATTGGCTCGAGCTTCATCCTGAAGAAGAAAGGCCTCAAGCGAG CTGGTGCTTCTGGTACCCGTGCAGGAGGTGGAGGTTATACTTATTTACTTGAGCCACTATGGTGGGTTGGCATGGTTACCATGATTGTTGGGGAGGTTGC AAATTTCGTGGCTTATGTTTATGCTCCTGCCGTTCTAGTGACTCCTCTTGGTGCACTAAGTATAATAATCAGTGCAATTTTGGCACACTTCATGCTGAAT GAACGGCTTCCGAGAATGGGTATTGTTGGTTGCGTTTCATGCATTGTTGGATCAGTAATAATTGTTATCCATGCTCCTCAAGAACAAACCCTACATTCTG TAGAAGAAATATGGAATCTAGCTACTCAGCCAGCTTTTTTGGTATATGTAGCTGTCACAGTCTCAACAGTGTTAGTTTTGGTTTTGCACTTTGAACCAAG ATTTGGTCAGACAAACATGTTGGTCTACTTGGGGATATGCTCCTTGATGGGTTCAATCACTGTTGTTAGCATCAAAGCAATTGGAACGGCGATAAAACTT ACACTTGATGGGATAAACCAGATTACTTATCCTCAGACTTGGTTTTTCCTCACAGTGGCAGCAATATGTGTCATTACACAGTTAAATTATTTGAATAAGG CGTTAGATACGTTTAATGCAGCAATTGTTTCTCCTGTATATTATGTTATGTTCACAACGTTGACTATTGCTGCTAGCGCTATAATGTTCAAGGATTGGGC AGGTCAAGATGCCAGCAGCATAGCGTCTGAGATATGTGGGTTTATCACTGTTCTTTCAGGGACTATCATACTTCACTCAACAAGAGATCAGGAACCTCCT CCTCCACGAGGTAGATTCTGCTCTGGCATTTCTAAGAAGATTGATTGCTACCGAGGTGATGCTGTCTTATCTATCCTGCAGTTTCTAATATTACCCGTCT TGTTACAGGAACTGTGTCATGGTATGTTAGAGATGATTCTTTCAAGAACCTTGATGGAGAACATTTACTCAACATTTTGGACTCTGAAGAACAATGAGTT CCTTAACCTCCTCATGGACTAA
AA sequence Show only first row Show all	>Lus10026280 pacid=23156402 polypeptide=Lus10026280 locus=Lus10026280.g ID=Lus10026280.BGIv1.0 annot-version=v1.0 MGVSENTKGLILAVASSAFIGSSFILKKKGLKRAGASGTRAGGGGYTYLLEPLWWVGMVTMIVGEVANFVAYVYAPAVLVTPLGALSIIISAILAHFMLN ERLPRMGIVGCVSCIVGSVIIVIHAPQEQTLHSVEEIWNLATQPAFLVYVAVTVSTVLVLVLHFEPRFGQTNMLVYLGICSLMGSITVVSIKAIGTAIKL TLDGINQITYPQTWFFLTVAAICVITQLNYLNKALDTFNAAIVSPVYYVMFTTLTIAASAIMFKDWAGQDASSIASEICGFITVLSGTIILHSTRDQEPP PPRGRFCSGISKKIDCYRGDAVLSILQFLILPVLLQELCHGMLEMILSRTLMENIYSTFWTLKNNEFLNLLMD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G21120			Protein of unknown function (D...		Lus10026280 [exp]	0	1
AT2G26510		PDE135	pigment defective embryo 135, ...		Lus10002787 [exp]	1.4	0.9264
AT5G51070		SAG15, CLPD, ER...	SENESCENCE ASSOCIATED GENE 15,...		Lus10043013 [exp]	1.4	0.9306
AT1G60160			Potassium transporter family p...		Lus10012993 [exp]	3.2	0.9133
AT4G19110			Protein kinase superfamily pro...		Lus10008303 [exp]	5.2	0.9191
AT3G51130			unknown protein		Lus10025972 [exp]	7.0	0.9088
AT2G32970			unknown protein		Lus10035309 [exp]	7.3	0.9039
AT1G60995			unknown protein		Lus10033791 [exp]	12.3	0.8991
AT2G23790			Protein of unknown function (D...		Lus10019663 [exp]	15.3	0.8844
AT5G01950			Leucine-rich repeat protein ki...		Lus10035605 [exp]	17.7	0.9126
AT4G33430		SERK3, RKS10, E...	RECEPTOR KINASES LIKE SERK 10,...		Lus10020962 [exp]	17.7	0.9079

Compare expression of checked genes

Lus10026280 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.