Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G38770 100 / 7e-23 ATPRP4, PRP4 ARABIDOPSIS THALIANA PROLINE-RICH PROTEIN 4, proline-rich protein 4 (.1) AT2G21140 95 / 3e-21 ATPRP2 proline-rich protein 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042392 [exp] 230 / 2e-70 AT2G21140 115 / 5e-29 proline-rich protein 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G129900 [exp] 140 / 1e-37 AT4G38770 153 / 1e-42 ARABIDOPSIS THALIANA PROLINE-RICH PROTEIN 4, proline-rich protein 4 (.1) Potri.004G168600 [exp] 142 / 5e-37 AT4G38770 164 / 6e-45 ARABIDOPSIS THALIANA PROLINE-RICH PROTEIN 4, proline-rich protein 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0287 [flax] [poplar] Transthyretin PF01190 [flax] [poplar] Pollen_Ole_e_1 Pollen protein Ole e 1 like
Representative CDS sequence Show only first row Show all	>Lus10026281 pacid=23156616 polypeptide=Lus10026281 locus=Lus10026281.g ID=Lus10026281.BGIv1.0 annot-version=v1.0 ATGAAGATGCTTTCCAGTTCTGGAGGGGCACAAATTTTTTGCCTCTCGCTTCTCTTCTTCTCTGCCACTCTCTGCCATGGCGCCCAGGTTGTTGGTTTTG GAGAATGTGCTGATTGCGCCAAGTCTCAACTTCACCCCAGTCAGATATTCTCAGGTCTTCATGTGACAATTGATTGCAAGCCACATAGTGGGGAGTTCAA GACGATTGGCTCCGCGAAGCTTGACGAGCTAGGCAAGTTCAGCGTCTCCCTCCCAAACGGCGTCGTGGCTGAAGACGGTCAGAAACTCAAACAAGAATGC TACGCTCAGCTCCACAGCGCCGCCGACGGCGCTGCTCCATGCGCTGCGCACGGCGGCCTGGAGTCAACCAAGGTCGTATTCAACTCCCAAAAGAAGACAT TCGAGCTCTCCGGCGGGAAGATTAAATTCTCGCCGGAGGTTTGCGCATCGGCATTCTTCTGGCCTTATTTCAAACACCCACATCTCCCCAAACTCAAACT CCCTCCAATGAAAAGCTTCAGCCACCACTTCAAGTTCCCTCCCAAAGCCTCCCCGCCTTTCCCCCCTAAAGTCTCCCCGCCATTTCCTCCCAAGGTTTTC CCGCCGGTAACTCTTCCTCCGCCTTACATTCCCAAGCCCACCCCGGAGCCGCCGGTTGTAGTCAAGCCGCCTCCGTACATCCCCAAGCCAACTCCCAAGC CGCCGGTTGTGGTGAAGCCGCCTTTCATCCCTAAGCCGACACCGAAGCCGCCGGTTGTGGTGAAGCCGCCTTATATACCAAAGCCGACCCCTAAGCCGCC GGTTGTAGTGAAGCCGCCATACATCCCAAAGCCAGAGCCACCGCCGGTGCCAAAGAAGGAGTGTCCACCGCCGGCGCCGATCTACAAGCCTCTGCCTCCA TTCCCAAAGGTTCCAATCTACCACAAGCCTCTGCCGCCGATCCCAAAGGTTCCGATTTACCACAAGCCTCTGCCTCCATTGCCAAAGGTTCCAATCTACC ACAAGCCTCTGCCGCCGATCCCAAAGGTTCCGATTTACCACAAGCCTCTGCCTCCATTGCCAAAGGTTCCCGTTTACCACAAGCCTCTGCCTCCATTGCC AAAGGTTCCCATATACCACAAGCCTCTGCCTCCATTGCCAAAGGTTCCGATTTACAAGCCGCACCCAAAACCACCGATTTCCCTACCTCCGATCCCGAAG GTCCCAATTTACAAGCCGTACCCAAAACCACCAATCTCTCTGTCTCCGATCCCAAAGGTTCCAATCTACAAGCCGTATCCAAAACCTCCGATCACTCTGC CTCCGATCCCAAAGTTTCCACCTTTCCACAAGAAACCATGCCCGCCTCGTCCCAAGTTTCCTCCATTCCCCAAGCATCATAAGTTTGGAAGCTGGCCACC TCTCCCACCCTTCTCCCCTATTCATTAG
AA sequence Show only first row Show all	>Lus10026281 pacid=23156616 polypeptide=Lus10026281 locus=Lus10026281.g ID=Lus10026281.BGIv1.0 annot-version=v1.0 MKMLSSSGGAQIFCLSLLFFSATLCHGAQVVGFGECADCAKSQLHPSQIFSGLHVTIDCKPHSGEFKTIGSAKLDELGKFSVSLPNGVVAEDGQKLKQEC YAQLHSAADGAAPCAAHGGLESTKVVFNSQKKTFELSGGKIKFSPEVCASAFFWPYFKHPHLPKLKLPPMKSFSHHFKFPPKASPPFPPKVSPPFPPKVF PPVTLPPPYIPKPTPEPPVVVKPPPYIPKPTPKPPVVVKPPFIPKPTPKPPVVVKPPYIPKPTPKPPVVVKPPYIPKPEPPPVPKKECPPPAPIYKPLPP FPKVPIYHKPLPPIPKVPIYHKPLPPLPKVPIYHKPLPPIPKVPIYHKPLPPLPKVPVYHKPLPPLPKVPIYHKPLPPLPKVPIYKPHPKPPISLPPIPK VPIYKPYPKPPISLSPIPKVPIYKPYPKPPITLPPIPKFPPFHKKPCPPRPKFPPFPKHHKFGSWPPLPPFSPIH

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G21140		ATPRP2	proline-rich protein 2 (.1)		Lus10026281 [exp]	0	1
AT1G24020		MLP423	MLP-like protein 423 (.1.2)		Lus10030646 [exp]	1.0	0.9619
AT4G17030		ATHEXPBETA3.1, ...	expansin-like B1 (.1)		Lus10000957 [exp]	1.4	0.9289
AT2G38110		ATGPAT6, GPAT6	glycerol-3-phosphate acyltrans...		Lus10004835 [exp]	2.8	0.9146
AT1G22360		ATUGT85A2, AT2	UDP-glucosyl transferase 85A2 ...		Lus10035903 [exp]	3.0	0.9214
AT5G45670			GDSL-like Lipase/Acylhydrolase...		Lus10015242 [exp]	3.2	0.9111
AT5G45960			GDSL-like Lipase/Acylhydrolase...		Lus10013957 [exp]	3.6	0.8912
AT1G24020		MLP423	MLP-like protein 423 (.1.2)		Lus10030840 [exp]	3.7	0.9057
AT1G15360	AP2_ERF	WIN1, SHN1	WAX INDUCER 1, SHINE 1, Integr...		Lus10043271 [exp]	6.2	0.8013
					Lus10007144 [exp]	6.5	0.8856
AT2G26910		PEC1, ABCG32, P...	PERMEABLE CUTICLE 1, ATP-bindi...		Lus10019453 [exp]	6.9	0.9052

Compare expression of checked genes

Lus10026281 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.