Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G16595 251 / 8e-84 Translocon-associated protein (TRAP), alpha subunit (.1) AT2G21160 208 / 4e-67 Translocon-associated protein (TRAP), alpha subunit (.1), Translocon-associated protein (TRAP), alpha subunit (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012169 [exp] 338 / 7e-118 AT2G16595 277 / 3e-94 Translocon-associated protein (TRAP), alpha subunit (.1) Lus10007577 [exp] 331 / 4e-115 AT2G16595 276 / 1e-93 Translocon-associated protein (TRAP), alpha subunit (.1) Lus10042391 [exp] 292 / 4e-99 AT2G16595 182 / 2e-56 Translocon-associated protein (TRAP), alpha subunit (.1) Lus10036932 [exp] 41 / 0.001 AT1G66350 258 / 1e-79 RGA-like 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G168500 [exp] 341 / 3e-119 AT2G16595 259 / 4e-87 Translocon-associated protein (TRAP), alpha subunit (.1) Potri.009G129800 [exp] 319 / 1e-110 AT2G21160 245 / 2e-81 Translocon-associated protein (TRAP), alpha subunit (.1), Translocon-associated protein (TRAP), alpha subunit (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03896 [flax] [poplar] TRAP_alpha Translocon-associated protein (TRAP), alpha subunit
Representative CDS sequence Show only first row Show all	>Lus10026282 pacid=23156563 polypeptide=Lus10026282 locus=Lus10026282.g ID=Lus10026282.BGIv1.0 annot-version=v1.0 ATGAACAAGCTGAAGGTTTTCTTCTTCGCTCTCCTCCTCCTCCTCCTCCTCGGCTCCCCTCTTCCCAGAGTTGCTAAGTGCAATGCAGATTCAGAGGCAG AATCCTTGCAGCCTACTGAAGAGACGAGCGATCTTGGAATTGTTGGTTCTAAAGCTGATGATGTTCCAGATTTTGGCGATGAGAATTTCAGTCCAGCCCT TGGGGTTCATACCGTTTGTGTTTTCCCCCAAAACAGCGCCAAGATTGTAACTGCTGGACAAGAGACGGAGCTTCTAGTTGGACTAAAAAATGATGGGGAG TCTAACATTAACATAGTTGCAATTAAGGCCAGTGTTCATCTTCCAGTGGATCACCGTGTTCTTGTTCAGAATCTCACTGCCCAGGCCTTCAAGAATGCAA CTGTTCCAGCCTCAGTGCATGCTACATTCCTGTATATTTTTTCAGTGAGCAAGTTTCTCCAGTCTGGAACCTTCCATCTTGTTGGCACTATCGTTTATGA GATAGACCAGCATCCATACCAGAGCACCTTCTACAATGGCACCGTTGAAGTTGTTGAATCTGTTGATTTCAGCATGGAATCAGTCTTCCTCGTTACTCTT GGAATTGCTCTTCTTATCCAGTTTGGTTTATGGATTCATAGTCAAATGCGGAACGCCTCTAAAAAAACTAAGAGGACCCCGAAGGTAGAAGTTGGTACTG TGACTAGAGATGCTTCGTTCGATGAATGGCTCGAGGGGACAGCCTACTCCCAGTCAAATGCCAACAAACAAAAGAAGAAGAATTAA
AA sequence Show only first row Show all	>Lus10026282 pacid=23156563 polypeptide=Lus10026282 locus=Lus10026282.g ID=Lus10026282.BGIv1.0 annot-version=v1.0 MNKLKVFFFALLLLLLLGSPLPRVAKCNADSEAESLQPTEETSDLGIVGSKADDVPDFGDENFSPALGVHTVCVFPQNSAKIVTAGQETELLVGLKNDGE SNINIVAIKASVHLPVDHRVLVQNLTAQAFKNATVPASVHATFLYIFSVSKFLQSGTFHLVGTIVYEIDQHPYQSTFYNGTVEVVESVDFSMESVFLVTL GIALLIQFGLWIHSQMRNASKKTKRTPKVEVGTVTRDASFDEWLEGTAYSQSNANKQKKKN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G16595			Translocon-associated protein ...		Lus10026282 [exp]	0	1
AT1G53300		TTL1	tetratricopetide-repeat thiore...		Lus10028154 [exp]	1.4	0.9003
AT4G35320			unknown protein		Lus10013844 [exp]	1.4	0.8821
AT2G18950		ATHPT, VTE2, TP...	VITAMIN E 2, homogentisate phy...		Lus10006961 [exp]	2.4	0.8662
AT1G05500		SYT5, NTMCTYPE2...	synaptotagmin 5, ARABIDOPSIS T...		Lus10008055 [exp]	4.1	0.8275
AT1G79750		ATNADP-ME4	Arabidopsis thaliana NADP-mali...		Lus10025823 [exp]	4.6	0.8523
AT5G60860		AtRABA1f	RAB GTPase homolog A1F (.1)		Lus10039895 [exp]	6.3	0.8644
AT2G39750			S-adenosyl-L-methionine-depend...		Lus10030155 [exp]	7.7	0.8602
AT5G56890			Protein kinase superfamily pro...		Lus10011933 [exp]	7.7	0.8356
AT5G66460		MAN7, AtMAN7	endo-beta-mannase 7, Glycosyl ...		Lus10014288 [exp]	8.1	0.8017
AT2G15730			P-loop containing nucleoside t...		Lus10012072 [exp]	8.5	0.8336

Compare expression of checked genes

Lus10026282 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.