Plant FIBer expression Database

Lus10026283 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G21180 69 / 9e-16 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10042391
[exp]
184 / 9e-59 AT2G16595 182 / 2e-56 Translocon-associated protein (TRAP), alpha subunit (.1)
Lus10012173
[exp]
106 / 1e-30 AT2G21180 106 / 2e-30 unknown protein
Lus10007573
[exp]
104 / 1e-29 AT2G21180 103 / 1e-29 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.004G167700
[exp]
117 / 1e-34 AT2G21180 91 / 2e-24 unknown protein
Potri.009G129200
[exp]
79 / 9e-20 AT2G21180 55 / 2e-10 unknown protein
PFAM info
Representative CDS sequence
>Lus10026283 pacid=23156493 polypeptide=Lus10026283 locus=Lus10026283.g ID=Lus10026283.BGIv1.0 annot-version=v1.0
ATGTATTACTACGGAAGATCAAGAAGCGACTCCTTCTTAGATTCCTTCACACTGAACCCACTCCCATACCCAGTTCTGCTGATCCTTGCCGTCATCGCCG
TCTTCCTCGGATCATCCTGGTACTTCAGCTACGAGGAGCTCGTCGAATCCACTGAGTCCCAGTTCGGGTGGGGCCTCTTCATCCTCCCAGTTCTCTTGAT
CTTCGTTGTCCGTTGGCAGTCTTCCTTTGACAGCTCCGACATGTTCTGCGGGTTGTCGCCTAGGGAGTTCCGGCGGCGGACCCACTATATCCAGTCATCG
TCGGAAGGGAGCTCGCCGTGGGGGGTGGCGGCGCTGATACTCATGCTGCTTGTACTGTTACAGTATCAGTCTGCTTTCCTCGACAGCTGGTTCTTTTGA
AA sequence
>Lus10026283 pacid=23156493 polypeptide=Lus10026283 locus=Lus10026283.g ID=Lus10026283.BGIv1.0 annot-version=v1.0
MYYYGRSRSDSFLDSFTLNPLPYPVLLILAVIAVFLGSSWYFSYEELVESTESQFGWGLFILPVLLIFVVRWQSSFDSSDMFCGLSPREFRRRTHYIQSS
SEGSSPWGVAALILMLLVLLQYQSAFLDSWFF

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT2G21180 unknown protein Lus10026283
[exp]
0 1
AT2G28680 RmlC-like cupins superfamily p... Lus10005880
[exp]
5.3 0.7755
AT4G04720 CPK21 calcium-dependent protein kina... Lus10006777
[exp]
7.9 0.8277
AT5G54390 ATAHL, AHL HAL2-like (.1) Lus10018453
[exp]
9.8 0.7498
AT5G43140 Peroxisomal membrane 22 kDa (M... Lus10018700
[exp]
9.9 0.7541
AT2G48060 unknown protein Lus10029972
[exp]
12.2 0.7690
AT4G04740 CPK23, ATCPK23 calcium-dependent protein kina... Lus10006776
[exp]
13.0 0.7974
AT5G07830 ATGUS2 glucuronidase 2 (.1) Lus10036963
[exp]
15.7 0.7671
AT5G03610 GDSL-like Lipase/Acylhydrolase... Lus10003253
[exp]
20.8 0.7377
AT4G04720 CPK21 calcium-dependent protein kina... Lus10020046
[exp]
25.7 0.7642
AT5G14180 MPL1 Myzus persicae-induced lipase ... Lus10026167
[exp]
27.0 0.7560

Lus10026283 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.