Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G34860 969 / 0 A/N-InvB alkaline/neutral invertase B, Plant neutral invertase family protein (.1.2) AT4G09510 891 / 0 A/N-InvI, CINV2 alkaline/neutral invertase I, cytosolic invertase 2 (.1.2) AT1G22650 874 / 0 A/N-InvD alkaline/neutral invertase D, Plant neutral invertase family protein (.1) AT1G35580 854 / 0 A/N-InvG, CINV1 alkaline/neutral invertase G, cytosolic invertase 1 (.1.2.3) AT1G72000 837 / 0 A/N-InvF alkaline/neutral invertase F, Plant neutral invertase family protein (.1) AT5G22510 594 / 0 INV-E, At-A/N-InvE Arabidopsis alkaline/neutral invertase E, alkaline/neutral invertase E, alkaline/neutral invertase (.1) AT1G56560 567 / 0 A/N-InvA alkaline/neutral invertase A, Plant neutral invertase family protein (.1) AT3G06500 560 / 0 A/N-InvC alkaline/neutral invertase C, Plant neutral invertase family protein (.1) AT3G05820 551 / 0 At-A/N-InvH Arabidopsis alkaline/neutral invertase H, alkaline/neutral invertase H, invertase H (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042390 [exp] 1152 / 0 AT4G34860 982 / 0.0 alkaline/neutral invertase B, Plant neutral invertase family protein (.1.2) Lus10033144 [exp] 922 / 0 AT4G34860 944 / 0.0 alkaline/neutral invertase B, Plant neutral invertase family protein (.1.2) Lus10034525 [exp] 914 / 0 AT4G34860 943 / 0.0 alkaline/neutral invertase B, Plant neutral invertase family protein (.1.2) Lus10014824 [exp] 901 / 0 AT4G09510 987 / 0.0 alkaline/neutral invertase I, cytosolic invertase 2 (.1.2) Lus10006078 [exp] 900 / 0 AT4G09510 1001 / 0.0 alkaline/neutral invertase I, cytosolic invertase 2 (.1.2) Lus10016938 [exp] 899 / 0 AT4G09510 985 / 0.0 alkaline/neutral invertase I, cytosolic invertase 2 (.1.2) Lus10009441 [exp] 732 / 0 AT4G09510 831 / 0.0 alkaline/neutral invertase I, cytosolic invertase 2 (.1.2) Lus10043375 [exp] 597 / 0 AT5G22510 918 / 0.0 Arabidopsis alkaline/neutral invertase E, alkaline/neutral invertase E, alkaline/neutral invertase (.1) Lus10019532 [exp] 593 / 0 AT5G22510 922 / 0.0 Arabidopsis alkaline/neutral invertase E, alkaline/neutral invertase E, alkaline/neutral invertase (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G167500 [exp] 987 / 0 AT4G34860 994 / 0.0 alkaline/neutral invertase B, Plant neutral invertase family protein (.1.2) Potri.009G129000 [exp] 965 / 0 AT4G34860 972 / 0.0 alkaline/neutral invertase B, Plant neutral invertase family protein (.1.2) Potri.019G082000 [exp] 912 / 0 AT4G09510 981 / 0.0 alkaline/neutral invertase I, cytosolic invertase 2 (.1.2) Potri.013G110800 [exp] 905 / 0 AT4G09510 992 / 0.0 alkaline/neutral invertase I, cytosolic invertase 2 (.1.2) Potri.005G239400 [exp] 905 / 0 AT4G34860 927 / 0.0 alkaline/neutral invertase B, Plant neutral invertase family protein (.1.2) Potri.002G173600 [exp] 733 / 0 AT4G09510 741 / 0.0 alkaline/neutral invertase I, cytosolic invertase 2 (.1.2) Potri.004G186500 [exp] 597 / 0 AT5G22510 913 / 0.0 Arabidopsis alkaline/neutral invertase E, alkaline/neutral invertase E, alkaline/neutral invertase (.1) Potri.008G024100 [exp] 588 / 0 AT5G22510 894 / 0.0 Arabidopsis alkaline/neutral invertase E, alkaline/neutral invertase E, alkaline/neutral invertase (.1) Potri.008G101500 [exp] 586 / 0 AT3G06500 911 / 0.0 alkaline/neutral invertase C, Plant neutral invertase family protein (.1) Potri.010G236100 [exp] 585 / 0 AT5G22510 897 / 0.0 Arabidopsis alkaline/neutral invertase E, alkaline/neutral invertase E, alkaline/neutral invertase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description
Representative CDS sequence Show only first row Show all	>Lus10026284 pacid=23156517 polypeptide=Lus10026284 locus=Lus10026284.g ID=Lus10026284.BGIv1.0 annot-version=v1.0 ATGTCTGTGCTCCACGATGGCCTTGGCTCTGTCACCGAAGTTGAGGAACTGGATTTCGCCAAGTTACTGGACAAACCGCCGAGGCTGCTCAACATAGAGC GGCAGCGATCTTGTGACGCGTGCTCCCTCAGCGAACTATCTAGTAGCTTGGCGACGTCTCCTCGTTTTGCACCGTCGCGACTGGACGGGAACAGTTCTCG AGTGTTGGATCACTCGGATTTAGTGCACTCACCGGGGACCGGTAGGACCGGCTTCAATACTCCGAGGTCACTAGTTGCTGGATTCGAAACGCATCCTTAC GTGGCGGAAGCCTGGGATGCGCTGCGGAGGTCCTTGGTCCATTTCAGGGGACAACCGGTTGGCACGATTGCTGCTCTTGATAACACCGAGGAGAATCTCA ACTACGATCAGGTGTTTGTGCGAGATTTTATTCCGAGTGGACTAGCATTTCTGATGAATGGGGAGCCAGAAATAGTGAAAATTTTCATTCTGAAGACCCT ACGCCTCCAGTCCTGGGAGAAAAAGATCGATAGATTCCATCTTGGAGAAGGAGTCATGCCTGCCAGTTTCAAGGTGCTGCATGATCCAGTAAGGAACCAT GAGACTTTGATTGCTGATTTTGGTGAGACTGCCATTGGTAGGGTGGCTCCCGTGGATTCTGGATTTTGGTGGATCATACTGTTAAGGGCATACACTAGGT CTACTGGTGACACTTCATTAGCCGAACTTCCGGAATGCCAAAAGGGAATGCGCCTTATTTTGAGCTTATGCCTTTCAGAGGGTTTTGATACGTTTCCGAC ACTTCTGTGTGCTGATGGGTGCTGCATGATTGATCGCAGGATGGGTGTTTATGGATACCCAATCGAGATTCAAGTACTTTTCTTCATGGCTTTAAGATGT GCTTTGGTGTTACTGAAACAAGATGAGGAAGGGAAAGAGTTCATGGAACGAATCGTGAAACGCCTTCACGCCTTGAGCTATCACATGAGGAGCTACTTTT GGCTTGATTTGAAACAACTCAATGACATATATCGGTACAAAACAGAGGAATACTCCCATACTGCAGTGAACAAGTTCAACGTCATACCCGATTCTCTTCC GGAATGGATATTTGATTTCATGCCCACTAAGGGAGGCTACTTCATTGGGAATGTGAGCCCAGCAAGAATGGATTTCCGTTGGTTTTGCTTGGGGAATTGT GTAGCCATCCTGTCATCTCTAGCCACCCCTGAACAGTCTATGGCAATCATGGACCTTATAGAATCACGTTGGGAGGAGTTGGTCGGTGAGATGCCTCTCA AAGTGTGCTATCCAGCTATCGAAAACCATGAATGGAGGATAGTAACAGGCTGTGATCCCAAGAACACAAGGTGGAGTTACCACAATGGAGGATCCTGGCC AGTACTTCTGTGGCTGCTGACAGCTGCATGCATCAAGACAGGGCGTCCGCAGATTGCACGGCGTGCTGTGGAGCTTGCTGAATCGAGACTAACGAAAGAT AGCTGGCCGGAGTATTATGATGGGAAGCTGGGGAGATACGTGGGGAAGCAAGCTAGGAAGAACCAGACATGGTCAGTGGCAGGGTACCTGGTGGCTAAGA TGATGCTGGAAGACCCTTCTCACTTGGGGATGGTGGCGTTGGAAGAAGACAAACAGATGAAGCCAGTGATGAAGAGATCAAATTCATGGACCTGCTGA
AA sequence Show only first row Show all	>Lus10026284 pacid=23156517 polypeptide=Lus10026284 locus=Lus10026284.g ID=Lus10026284.BGIv1.0 annot-version=v1.0 MSVLHDGLGSVTEVEELDFAKLLDKPPRLLNIERQRSCDACSLSELSSSLATSPRFAPSRLDGNSSRVLDHSDLVHSPGTGRTGFNTPRSLVAGFETHPY VAEAWDALRRSLVHFRGQPVGTIAALDNTEENLNYDQVFVRDFIPSGLAFLMNGEPEIVKIFILKTLRLQSWEKKIDRFHLGEGVMPASFKVLHDPVRNH ETLIADFGETAIGRVAPVDSGFWWIILLRAYTRSTGDTSLAELPECQKGMRLILSLCLSEGFDTFPTLLCADGCCMIDRRMGVYGYPIEIQVLFFMALRC ALVLLKQDEEGKEFMERIVKRLHALSYHMRSYFWLDLKQLNDIYRYKTEEYSHTAVNKFNVIPDSLPEWIFDFMPTKGGYFIGNVSPARMDFRWFCLGNC VAILSSLATPEQSMAIMDLIESRWEELVGEMPLKVCYPAIENHEWRIVTGCDPKNTRWSYHNGGSWPVLLWLLTAACIKTGRPQIARRAVELAESRLTKD SWPEYYDGKLGRYVGKQARKNQTWSVAGYLVAKMMLEDPSHLGMVALEEDKQMKPVMKRSNSWTC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G34860		A/N-InvB	alkaline/neutral invertase B, ...		Lus10026284 [exp]	0	1
AT1G13030			sphere organelles protein-rela...		Lus10036876 [exp]	2.2	0.9183
AT5G58930			Protein of unknown function (D...		Lus10018206 [exp]	7.5	0.9088
AT3G13560			O-Glycosyl hydrolases family 1...		Lus10039179 [exp]	8.0	0.8875
AT4G10630			Glutaredoxin family protein (....		Lus10033238 [exp]	8.5	0.9015
AT1G80660		AHA9	H\(+\)-ATPase 9, H\(+\)-ATPase...		Lus10002326 [exp]	9.2	0.8958
AT4G10630			Glutaredoxin family protein (....		Lus10008270 [exp]	11.1	0.8989
AT2G40510			Ribosomal protein S26e family ...		Lus10029042 [exp]	17.9	0.8685
AT1G65700			Small nuclear ribonucleoprotei...		Lus10042884 [exp]	19.0	0.8690
AT5G66750		CHR01, CHA1, SO...	SOMNIFEROUS 1, DECREASED DNA M...		Lus10041735 [exp]	20.9	0.8984
AT1G62500			Bifunctional inhibitor/lipid-t...		Lus10028930 [exp]	23.1	0.8568

Compare expression of checked genes

Lus10026284 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.