Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G38790 452 / 1e-162 ER lumen protein retaining receptor family protein (.1) AT2G21190 448 / 3e-161 ER lumen protein retaining receptor family protein (.1) AT1G75760 446 / 3e-160 ER lumen protein retaining receptor family protein (.1) AT1G19970 429 / 9e-154 ER lumen protein retaining receptor family protein (.1) AT3G25160 325 / 2e-112 ER lumen protein retaining receptor family protein (.1) AT3G25040 100 / 2e-25 ERD2B endoplasmic reticulum retention defective 2B (.1) AT1G29330 91 / 6e-22 ATERD2, AERD2, ERD2 ARABIDOPSIS THALIANA ENDOPLASMIC RETICULUM RETENTION DEFECTIVE 2, ARABIDOPSIS ENDOPLASMIC RETICULUM RETENTION DEFECTIVE 2, ER lumen protein retaining receptor family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007570 [exp] 460 / 5e-166 AT4G38790 466 / 2e-168 ER lumen protein retaining receptor family protein (.1) Lus10017213 [exp] 441 / 4e-158 AT1G75760 481 / 5e-174 ER lumen protein retaining receptor family protein (.1) Lus10021097 [exp] 433 / 4e-155 AT1G75760 475 / 8e-172 ER lumen protein retaining receptor family protein (.1) Lus10012176 [exp] 387 / 2e-136 AT2G21190 397 / 2e-140 ER lumen protein retaining receptor family protein (.1) Lus10042389 [exp] 378 / 5e-134 AT2G21190 355 / 5e-125 ER lumen protein retaining receptor family protein (.1) Lus10003146 [exp] 300 / 2e-102 AT3G25160 388 / 2e-137 ER lumen protein retaining receptor family protein (.1) Lus10038198 [exp] 284 / 4e-96 AT3G25160 362 / 4e-127 ER lumen protein retaining receptor family protein (.1) Lus10022763 [exp] 282 / 1e-95 AT3G25160 355 / 8e-125 ER lumen protein retaining receptor family protein (.1) Lus10025906 [exp] 270 / 1e-85 AT3G25150 363 / 4e-118 Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain (.1), Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G167400 [exp] 480 / 6e-174 AT4G38790 472 / 1e-170 ER lumen protein retaining receptor family protein (.1) Potri.009G128900 [exp] 479 / 1e-173 AT2G21190 476 / 2e-172 ER lumen protein retaining receptor family protein (.1) Potri.002G022300 [exp] 457 / 1e-164 AT1G75760 464 / 2e-167 ER lumen protein retaining receptor family protein (.1) Potri.002G246700 [exp] 309 / 4e-106 AT3G25160 400 / 5e-142 ER lumen protein retaining receptor family protein (.1) Potri.017G056000 [exp] 115 / 3e-31 AT3G25040 383 / 3e-137 endoplasmic reticulum retention defective 2B (.1) Potri.001G315800 [exp] 106 / 7e-28 AT3G25040 355 / 3e-126 endoplasmic reticulum retention defective 2B (.1) Potri.011G071200 [exp] 70 / 4e-14 AT1G29330 341 / 1e-120 ARABIDOPSIS THALIANA ENDOPLASMIC RETICULUM RETENTION DEFECTIVE 2, ARABIDOPSIS ENDOPLASMIC RETICULUM RETENTION DEFECTIVE 2, ER lumen protein retaining receptor family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0141 [flax] [poplar] MtN3-like PF00810 [flax] [poplar] ER_lumen_recept ER lumen protein retaining receptor
Representative CDS sequence Show only first row Show all	>Lus10026285 pacid=23156474 polypeptide=Lus10026285 locus=Lus10026285.g ID=Lus10026285.BGIv1.0 annot-version=v1.0 ATGAGGGCACCGAAAAGGCCGATCTACATGTTGACAACATGGGTCAAGCGGCAGCCACCCAAAGTCAAGGGCTTTCTGGCCGTTGTAGCCGGAATGTCGG CTTTGGTCGTCCTCCGCTTCATCGTCCATGACCACGACAACCTTTTCGTCGCAGCTGAGGCCGTCCACTCACTTGGCATCTCTGTTCTTATATACAAGCT CATGAAGGAGAAGACTTGTGCCGGGATATCACTAAAATCGCAAGAGCTGACAGCTATATTCTTAGCATTTAGGCTGTACTGCAGCGTTGTTATGGAGTAT GATATACACACACTCCTAGATTTAGCTACACTGGCAACTACCATATGGGTTATTTATATGATCCGCTTCAAGCTCAAGTCTAGTTACATGGCGGCCAAGG ACAACTTTGCAATCTATTTTGTGCTGGTACCTTGCGGTGTTTTAGCTTTGCTGATTCATCCATCAACATCACACAATATATTTCATAGGATCTTCTGGGC CTTCTGTGTTTACCTGGAATCTGTTTCTGTGCTCCCTCAGTTACGAGCGATGCAGAACACCAAGATTGTTGAGCCATTCACTGCCCACTATGTCTTTGCA CTCGGAATCGCAAGGTTCCTCAGCTGTGCTCACTGGGTTCTCCAGGTTTTGGACAGCCGTGGACACTTGCTGGTAGCTTTGGGGTATGGATTGTGGCCAT CTATGGTTCTCATCTCCGAAATCGTACAGACTTTCATTCTAGCTGATTTCTGTTACTACTATGTGAAGAGTGTCTTTGGCGGACAGCTTGTTCTACGCCT TCCTCCCGGAGTGGTATAA
AA sequence Show only first row Show all	>Lus10026285 pacid=23156474 polypeptide=Lus10026285 locus=Lus10026285.g ID=Lus10026285.BGIv1.0 annot-version=v1.0 MRAPKRPIYMLTTWVKRQPPKVKGFLAVVAGMSALVVLRFIVHDHDNLFVAAEAVHSLGISVLIYKLMKEKTCAGISLKSQELTAIFLAFRLYCSVVMEY DIHTLLDLATLATTIWVIYMIRFKLKSSYMAAKDNFAIYFVLVPCGVLALLIHPSTSHNIFHRIFWAFCVYLESVSVLPQLRAMQNTKIVEPFTAHYVFA LGIARFLSCAHWVLQVLDSRGHLLVALGYGLWPSMVLISEIVQTFILADFCYYYVKSVFGGQLVLRLPPGVV

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G38790			ER lumen protein retaining rec...		Lus10026285 [exp]	0	1
AT5G23570		SGS3, ATSGS3	SUPPRESSOR OF GENE SILENCING 3...		Lus10004302 [exp]	13.9	0.7789
AT3G03920			H/ACA ribonucleoprotein comple...		Lus10020289 [exp]	14.9	0.7945
AT2G33845			Nucleic acid-binding, OB-fold-...		Lus10039889 [exp]	21.2	0.7417
AT1G60590			Pectin lyase-like superfamily ...		Lus10030604 [exp]	23.2	0.7485
AT2G03370			Glycosyltransferase family 61 ...		Lus10036806 [exp]	24.4	0.7560
AT2G23530			Zinc-finger domain of monoamin...		Lus10023846 [exp]	26.6	0.7321
AT5G43360		PHT1;3, ATPT4, ...	PHOSPHATE TRANSPORTER 3, phosp...		Lus10012860 [exp]	30.1	0.6841
AT5G54650		ATFH5, Fh5	FORMIN HOMOLOGY 5, formin homo...		Lus10011168 [exp]	39.4	0.7391
AT1G54460			TPX2 (targeting protein for Xk...		Lus10006563 [exp]	42.6	0.7036
AT4G36520			Chaperone DnaJ-domain superfam...		Lus10028322 [exp]	51.1	0.7033

Compare expression of checked genes

Lus10026285 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.