Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G34850 650 / 0 LAP5 LESS ADHESIVE POLLEN 5, Chalcone and stilbene synthase family protein (.1) AT1G02050 512 / 0 LAP6 LESS ADHESIVE POLLEN 6, Chalcone and stilbene synthase family protein (.1) AT4G00040 501 / 2e-178 Chalcone and stilbene synthase family protein (.1) AT5G13930 293 / 2e-96 ATCHS, TT4, CHS TRANSPARENT TESTA 4, CHALCONE SYNTHASE, Chalcone and stilbene synthase family protein (.1) AT4G34520 62 / 2e-10 KCS18, FAE1 FATTY ACID ELONGATION1, 3-ketoacyl-CoA synthase 18 (.1) AT3G52160 62 / 3e-10 KCS15 3-ketoacyl-CoA synthase 15 (.1) AT2G15090 59 / 3e-09 KCS8 3-ketoacyl-CoA synthase 8 (.1) AT2G46720 58 / 6e-09 KCS13, HIC HIGH CARBON DIOXIDE, 3-ketoacyl-CoA synthase 13 (.1) AT1G71160 57 / 7e-09 KCS7 3-ketoacyl-CoA synthase 7 (.1) AT4G34510 56 / 2e-08 KCS17, KCS2 3-ketoacyl-CoA synthase 17 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042388 [exp] 773 / 0 AT4G34850 636 / 0.0 LESS ADHESIVE POLLEN 5, Chalcone and stilbene synthase family protein (.1) Lus10039904 [exp] 509 / 0 AT1G02050 577 / 0.0 LESS ADHESIVE POLLEN 6, Chalcone and stilbene synthase family protein (.1) Lus10002187 [exp] 503 / 1e-178 AT1G02050 576 / 0.0 LESS ADHESIVE POLLEN 6, Chalcone and stilbene synthase family protein (.1) Lus10031622 [exp] 307 / 1e-101 AT5G13930 526 / 0.0 TRANSPARENT TESTA 4, CHALCONE SYNTHASE, Chalcone and stilbene synthase family protein (.1) Lus10023670 [exp] 306 / 2e-100 AT5G13930 693 / 0.0 TRANSPARENT TESTA 4, CHALCONE SYNTHASE, Chalcone and stilbene synthase family protein (.1) Lus10033717 [exp] 299 / 9e-99 AT5G13930 518 / 0.0 TRANSPARENT TESTA 4, CHALCONE SYNTHASE, Chalcone and stilbene synthase family protein (.1) Lus10011746 [exp] 297 / 3e-98 AT5G13930 524 / 0.0 TRANSPARENT TESTA 4, CHALCONE SYNTHASE, Chalcone and stilbene synthase family protein (.1) Lus10041508 [exp] 219 / 2e-68 AT5G13930 473 / 5e-168 TRANSPARENT TESTA 4, CHALCONE SYNTHASE, Chalcone and stilbene synthase family protein (.1) Lus10011745 [exp] 163 / 5e-48 AT5G13930 389 / 6e-137 TRANSPARENT TESTA 4, CHALCONE SYNTHASE, Chalcone and stilbene synthase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G167300 [exp] 681 / 0 AT4G34850 637 / 0.0 LESS ADHESIVE POLLEN 5, Chalcone and stilbene synthase family protein (.1) Potri.009G128800 [exp] 676 / 0 AT4G34850 631 / 0.0 LESS ADHESIVE POLLEN 5, Chalcone and stilbene synthase family protein (.1) Potri.014G056300 [exp] 530 / 0 AT1G02050 595 / 0.0 LESS ADHESIVE POLLEN 6, Chalcone and stilbene synthase family protein (.1) Potri.002G141400 [exp] 523 / 0 AT1G02050 618 / 0.0 LESS ADHESIVE POLLEN 6, Chalcone and stilbene synthase family protein (.1) Potri.001G051500 [exp] 315 / 4e-105 AT5G13930 692 / 0.0 TRANSPARENT TESTA 4, CHALCONE SYNTHASE, Chalcone and stilbene synthase family protein (.1) Potri.001G051600 [exp] 313 / 2e-104 AT5G13930 692 / 0.0 TRANSPARENT TESTA 4, CHALCONE SYNTHASE, Chalcone and stilbene synthase family protein (.1) Potri.003G176800 [exp] 313 / 3e-104 AT5G13930 693 / 0.0 TRANSPARENT TESTA 4, CHALCONE SYNTHASE, Chalcone and stilbene synthase family protein (.1) Potri.003G176900 [exp] 308 / 2e-102 AT5G13930 694 / 0.0 TRANSPARENT TESTA 4, CHALCONE SYNTHASE, Chalcone and stilbene synthase family protein (.1) Potri.014G145100 [exp] 306 / 2e-101 AT5G13930 679 / 0.0 TRANSPARENT TESTA 4, CHALCONE SYNTHASE, Chalcone and stilbene synthase family protein (.1) Potri.003G176700 [exp] 306 / 2e-101 AT5G13930 684 / 0.0 TRANSPARENT TESTA 4, CHALCONE SYNTHASE, Chalcone and stilbene synthase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0046 [flax] [poplar] Thiolase PF02797 [flax] [poplar] Chal_sti_synt_C Chalcone and stilbene synthases, C-terminal domain CL0046 [flax] [poplar] Thiolase PF00195 [flax] [poplar] Chal_sti_synt_N Chalcone and stilbene synthases, N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10026286 pacid=23156623 polypeptide=Lus10026286 locus=Lus10026286.g ID=Lus10026286.BGIv1.0 annot-version=v1.0 ATGGAAGCTGTAAATGGCAGCAGGTCGACGAGGAAGGCCAGCCCTGGGAAAGCTACGATCTTGGCTCTGGGAAAGGCGTTTCCACATCAGCTTGTAATGC AAGAATTTCTGGTTGATGGTTACTTCAAGAACACCAACTGTGATGATCCAGAACTCAAGGAGAAGCTAACTCGACTATGCAAGACAACTACTGTGAAAAC CAGGTACGTAGTGATGTCGGACGAAATACTGGAGCAGTATCCGGAGCTTGCACTCGAAGGGAAAGCAACGGTGAAACAAAGGCTAGACATATGCAACGAA GCTGTGACGCGAATGGCAACCGAAGCTTCAGAAGCATGCATCAAGAACTGGGGGAAACCTGTCTCAGACATAACTCATTTGGTCTACGTCTCTTCAAGTG AAGCTAGGCTACCCGGTGGGGACCTTTACCTCGCAAAATGTCTTGGTCTCAGCCCCGAGACAAATCGTGTTATGCTTTACTTCATGGGCTGTTCCGGAGG TGTAGCTGGTCTTAGAGTTGCAAAAGACATTGCAGAGAACAATCCAGGAAGTAGGGTTCTTCTAGCTACTTCTGAAACCACCATTATTGGGTTCAAACCA CCAAGTGCAAGCAGGCCTTACGATCTTGTTGGTGTTGCGCTCTTTGGTGATGGTGCCGGAGCCATGATCGTAGGAGCGGATCCGATTCCAGGCGATGAGT CCCCTCCTCTCTTCGAGCTTCACACAGCAATTCAGAACTTTCTCCCCGATACTGAAAAGACAATCGATGGTAGGCTGACAGAAGAAGGCATCAGTTTCAA GCTTGCAAGGGAGCTCCCTCAGATAATAGAGGATAATATTGAAGGTTTCTGTCTCAAGCTGATGGGAGTTTTAGGGCTATCTGCTAAGGAGTATAATACA TTGTTCTGGGCTGTTCATCCTGGGGGGCCTGCGATTCTGAACAGGATGGAGAAGAGGCTCGATTTGATGCCAGACAAACTTAATGCTAGTCGAAGAGCGC TGATGGACTATGGTAATGCTAGCAGCAATACTATTGTCTATGTGTTGGAATACATGATAGAAGAGAGCTTAAAGATGAAGGAGAAACAGAGTGAATGGGG CTTGATTCTGGCTTTTGGACCTGGGATTTCTTTCGAAGGGATCCTTGCGAGGAACCTCGCAATCTGA
AA sequence Show only first row Show all	>Lus10026286 pacid=23156623 polypeptide=Lus10026286 locus=Lus10026286.g ID=Lus10026286.BGIv1.0 annot-version=v1.0 MEAVNGSRSTRKASPGKATILALGKAFPHQLVMQEFLVDGYFKNTNCDDPELKEKLTRLCKTTTVKTRYVVMSDEILEQYPELALEGKATVKQRLDICNE AVTRMATEASEACIKNWGKPVSDITHLVYVSSSEARLPGGDLYLAKCLGLSPETNRVMLYFMGCSGGVAGLRVAKDIAENNPGSRVLLATSETTIIGFKP PSASRPYDLVGVALFGDGAGAMIVGADPIPGDESPPLFELHTAIQNFLPDTEKTIDGRLTEEGISFKLARELPQIIEDNIEGFCLKLMGVLGLSAKEYNT LFWAVHPGGPAILNRMEKRLDLMPDKLNASRRALMDYGNASSNTIVYVLEYMIEESLKMKEKQSEWGLILAFGPGISFEGILARNLAI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G34850		LAP5	LESS ADHESIVE POLLEN 5, Chalco...		Lus10026286 [exp]	0	1
AT5G01750			Protein of unknown function (D...		Lus10014021 [exp]	1.4	0.8210
AT1G33030			O-methyltransferase family pro...		Lus10014825 [exp]	3.9	0.7887
AT3G26040			HXXXD-type acyl-transferase fa...		Lus10042994 [exp]	5.7	0.8224
AT1G14740			Protein of unknown function (D...		Lus10013248 [exp]	15.0	0.7775
AT1G49950	MYB	ATTRB1, TRB1	telomere repeat binding factor...		Lus10025203 [exp]	23.1	0.7712
AT3G44900		ATCHX4	cation/H+ exchanger 4, cation/...		Lus10037374 [exp]	23.9	0.7294
AT3G24550		ATPERK1	proline-rich extensin-like rec...		Lus10014319 [exp]	24.4	0.7358
AT3G21070		NADK1, ATNADK-1	NAD kinase 1 (.1.2)		Lus10009958 [exp]	24.5	0.7630
AT1G32560		AtLEA4-1	Late Embryogenesis Abundant 4-...		Lus10030959 [exp]	28.3	0.7618
					Lus10000768 [exp]	32.5	0.7445

Compare expression of checked genes

Lus10026286 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.