Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G34840 326 / 2e-113 ATMTN2, ATMTAN2 ARABIDOPSIS METHYLTHIOADENOSINE NUCLEOSIDASE 2, Phosphorylase superfamily protein (.1) AT4G38800 321 / 3e-111 ATMTN1, ATMTAN1 ARABIDOPSIS METHYLTHIOADENOSINE NUCLEOSIDASE 1, methylthioadenosine nucleosidase 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042387 [exp] 469 / 4e-169 AT4G34840 341 / 1e-118 ARABIDOPSIS METHYLTHIOADENOSINE NUCLEOSIDASE 2, Phosphorylase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G128700 [exp] 404 / 7e-144 AT4G38800 387 / 4e-137 ARABIDOPSIS METHYLTHIOADENOSINE NUCLEOSIDASE 1, methylthioadenosine nucleosidase 1 (.1) Potri.004G167200 [exp] 399 / 4e-142 AT4G38800 368 / 1e-129 ARABIDOPSIS METHYLTHIOADENOSINE NUCLEOSIDASE 1, methylthioadenosine nucleosidase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0408 [flax] [poplar] PUP PF01048 [flax] [poplar] PNP_UDP_1 Phosphorylase superfamily
Representative CDS sequence Show only first row Show all	>Lus10026287 pacid=23156383 polypeptide=Lus10026287 locus=Lus10026287.g ID=Lus10026287.BGIv1.0 annot-version=v1.0 ATGGGTCCTCCGCACGGCGGCGGATCAGACGCCGCTGCTTCAGTTGACCAGCAGCAACCGCGTTCAATTTCTTCCATCCTTATAATCATCGCTATGCAGA CGGAAGCCATGCCTTTAGTCAACAAGTTCCAGCTAAAGGAAGACCTTGAGTCTGTGTTTCCTAAAGGAGCTCCCTGGGTCAGGTACTCTGGTACATACAA GGATCTCGAAATCAATTTAGTGTGGCCTGGGAAAGACACAACTCTAGGCGTTGACTGTGTTGGCACAGTTTCGGCTGCTCTTGTTACCTATGCTGCAATC CAAGCATTGAAGCCTGACTTAATTATCAATGCTGGCACAGCAGGAGGGTTTAAGGCGAAAGGAGCTGGTGTTGGTGATGTCTATCTGGTGTGTGATGTTG CTTTTCATGACAGGAGAATCCCCATTCCTGTTTTTGATCTCTATGGAGTAGGTTCAAGGAAGCCCCACTCAACACCCAATATAGCAGCAGACCTTAAATT AAAGATTGGTAAACTCTCCACTGGTGATTCTTTGGATATGTCACCTCAAGATGAGGCATCGATAACCGCAAATGATGCTGCAGTGAAAGATATGGAGGGT GCAGCTGTTGCCTATGTGGCTGAAATGTTACAAGTCCCAGCCATATTTGTAAAGGCCGTGACCGACATTGTGGATGGTGACAAACCAACCACGGAGGAGT TCCTGCAAAATCTAGCATCAGTGACTGCTGCACTCGACGAGTCTGTCACCCAAGTAGTCGATTTCATCAGTGGAAAGTGTCTCTCTGATCTTTGA
AA sequence Show only first row Show all	>Lus10026287 pacid=23156383 polypeptide=Lus10026287 locus=Lus10026287.g ID=Lus10026287.BGIv1.0 annot-version=v1.0 MGPPHGGGSDAAASVDQQQPRSISSILIIIAMQTEAMPLVNKFQLKEDLESVFPKGAPWVRYSGTYKDLEINLVWPGKDTTLGVDCVGTVSAALVTYAAI QALKPDLIINAGTAGGFKAKGAGVGDVYLVCDVAFHDRRIPIPVFDLYGVGSRKPHSTPNIAADLKLKIGKLSTGDSLDMSPQDEASITANDAAVKDMEG AAVAYVAEMLQVPAIFVKAVTDIVDGDKPTTEEFLQNLASVTAALDESVTQVVDFISGKCLSDL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G34840		ATMTN2, ATMTAN2	ARABIDOPSIS METHYLTHIOADENOSIN...		Lus10026287 [exp]	0	1
AT1G49590			C2H2 and C2HC zinc fingers sup...		Lus10027913 [exp]	7.1	0.9087
AT5G08560			transducin family protein / WD...		Lus10001046 [exp]	10.7	0.9157
AT5G11500			unknown protein		Lus10037899 [exp]	10.8	0.9101
AT1G19130			unknown protein		Lus10027661 [exp]	12.0	0.9130
AT3G12480	CCAAT	NF-YC11	"nuclear factor Y, subunit C11...		Lus10024082 [exp]	15.5	0.8726
AT5G08450			unknown protein		Lus10004299 [exp]	15.7	0.8566
AT5G08560			transducin family protein / WD...		Lus10001045 [exp]	18.9	0.9128
AT3G49390		CID10	CTC-interacting domain 10 (.1....		Lus10008851 [exp]	23.7	0.9067
AT5G11950		LOG8	LONELY GUY 8, Putative lysine ...		Lus10026131 [exp]	28.9	0.9078
AT5G49555			FAD/NAD(P)-binding oxidoreduct...		Lus10041743 [exp]	29.9	0.8600

Compare expression of checked genes

Lus10026287 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.