Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G29810 357 / 4e-120 COBL2 COBRA-like protein 2 precursor (.1) AT5G60920 352 / 6e-118 COB COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) AT3G02210 348 / 9e-117 COBL1 COBRA-like protein 1 precursor (.1) AT5G15630 340 / 9e-114 IRX6, COBL4 IRREGULAR XYLEM 6, COBRA-LIKE4, COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) AT1G09790 293 / 3e-95 COBL6 COBRA-like protein 6 precursor (.1) AT4G16120 130 / 2e-32 ATSEB1, COBL7 ARABIDOPSIS THALIANA SEC61 BETA 1, COBRA-like protein-7 precursor (.1) AT3G20580 126 / 4e-31 COBL10 COBRA-like protein 10 precursor (.1) AT4G27110 120 / 2e-29 COBL11 COBRA-like protein 11 precursor (.1) AT5G49270 119 / 1e-28 DER9, MRH4, SHV2, COBL9 SHAVEN 2, MUTANT ROOT HAIR 4, DEFORMED ROOT HAIRS 9, COBRA-LIKE 9, COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) AT3G16860 106 / 2e-24 COBL8 COBRA-like protein 8 precursor (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042386 [exp] 744 / 0 AT3G29810 367 / 2e-124 COBRA-like protein 2 precursor (.1) Lus10021144 [exp] 343 / 1e-114 AT5G60920 749 / 0.0 COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) Lus10007986 [exp] 343 / 2e-114 AT5G60920 755 / 0.0 COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) Lus10012598 [exp] 342 / 3e-114 AT3G02210 697 / 0.0 COBRA-like protein 1 precursor (.1) Lus10017863 [exp] 341 / 7e-114 AT5G15630 717 / 0.0 IRREGULAR XYLEM 6, COBRA-LIKE4, COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) Lus10017866 [exp] 341 / 9e-114 AT5G15630 625 / 0.0 IRREGULAR XYLEM 6, COBRA-LIKE4, COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) Lus10035131 [exp] 339 / 2e-113 AT5G15630 704 / 0.0 IRREGULAR XYLEM 6, COBRA-LIKE4, COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) Lus10031972 [exp] 338 / 6e-113 AT5G15630 704 / 0.0 IRREGULAR XYLEM 6, COBRA-LIKE4, COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) Lus10034670 [exp] 338 / 1e-112 AT5G15630 715 / 0.0 IRREGULAR XYLEM 6, COBRA-LIKE4, COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G167100 [exp] 459 / 3e-160 AT3G29810 407 / 2e-139 COBRA-like protein 2 precursor (.1) Potri.004G117100 [exp] 352 / 4e-118 AT3G02210 724 / 0.0 COBRA-like protein 1 precursor (.1) Potri.015G060000 [exp] 348 / 1e-116 AT5G60920 759 / 0.0 COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) Potri.015G060100 [exp] 341 / 5e-114 AT5G15630 739 / 0.0 IRREGULAR XYLEM 6, COBRA-LIKE4, COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) Potri.015G060200 [exp] 336 / 3e-112 AT5G15630 669 / 0.0 IRREGULAR XYLEM 6, COBRA-LIKE4, COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) Potri.004G117200 [exp] 335 / 6e-112 AT5G15630 679 / 0.0 IRREGULAR XYLEM 6, COBRA-LIKE4, COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) Potri.012G062200 [exp] 334 / 3e-111 AT5G15630 586 / 0.0 IRREGULAR XYLEM 6, COBRA-LIKE4, COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) Potri.017G098700 [exp] 317 / 7e-105 AT5G60920 614 / 0.0 COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) Potri.004G219200 [exp] 309 / 8e-102 AT1G09790 511 / 2e-180 COBRA-like protein 6 precursor (.1) Potri.017G098600 [exp] 303 / 9e-100 AT5G60920 601 / 0.0 COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04833 [flax] [poplar] COBRA COBRA-like protein
Representative CDS sequence Show only first row Show all	>Lus10026288 pacid=23156565 polypeptide=Lus10026288 locus=Lus10026288.g ID=Lus10026288.BGIv1.0 annot-version=v1.0 ATGAATTGGTCCCTCATCTGTTTATGCTCTTTTGCTATGAAGCTACTCATTTTAATCGTTTTCTCTTCTCCATCAGAAAATGGAGGCTATGTGGCAAGGG TGACGATCAACAACTTCTACCAGTACCGCCACGTGGAGAAGCCAGGGTGGCAGATTGGGTGGGGTTGGGGTAACGGAGAGATAATCCTGAAGATTGCAGG TGCGTACGCAACTGATTCAGGGGACTGCAAAAACTTCGCCGCCCTGAAACCCCACTGCTGCAAGCAAAACCCTATCATCGCCGACCTGTGGCCCGGCGGC GCATCTACCCAAGGAACCAACGAAGTCGAGGGATGCTGCAAAAGCGGCGTGATCTCGGCTTGGGCGATCGATCCGTCTCAGTCGTCCTCGGCTTTTGAGA TCACTGTCGGGAACCTCCCGCCGAATTCCAGCCACCCACCGGCGAACCTCACTCTGTTTGTTCCGGGTCTTGGATATACTTGCGGCCCGATTCAGGATTC GGACCCCACTGTGTTTCTTGATTACGGTGGCAGGAGAAAGATTCGAGCTTTCCGGACGATGAAATCAGTATGCACATACTCAAGTTTCCTGGCGAATAGA GCGCCCACTTGTTGCGTTTCCCTCTCAACATTCTACAGCCCTGAGATCACCAATTGTCCTAAATGCAGTTGTGGATGCAGAGACTCTGCCTCTGATGGAA TTTCTTGTTCAAGCCAGAGCTCTGCTTCGTACAGTGGGAATGCTGTGGACAAGTTACAGTGTACAGATCACATGTGCCCGGTTCGAGTTCATTGGCATGT GAAGAACAGTTACACAAAGTATTGGAGGGTGAAGCTCACAATTTCCAACTACAATCTCCAGAAGAACTACTCTGACTGGAATGCTGTAATCCAACACCCT GGTTTCCGTAAGAAAGCAATCTCTTACAGCTTCAACAGCACCACCCTCCCCACTGTCGGCATTGAAGACGAGGTTGCTCTGTTCTGGGGATTGGCATACT ACAACAGCGAATTAACGGAAGCTAACGATTTCGAGATGGGGTCAGTAACGACAGACATTATCCTAGAGAAGGATTCAGATTCATTCACGTTAAGTAACGG ATGGGCACTGCCTAGAAGAGTTTTCTTCGGCGGCGAGGAATGCCAAATGCCGCTTCCTGACTCGTATCCTATGCTGCCAAACGGTGCCACGTCGTTACAA CATCAGTACTCTGTTTTGTATCTGCTATTGATGATGATGATGATGGTTTTGCCAGAACTAAGACCGTGGATTTGA
AA sequence Show only first row Show all	>Lus10026288 pacid=23156565 polypeptide=Lus10026288 locus=Lus10026288.g ID=Lus10026288.BGIv1.0 annot-version=v1.0 MNWSLICLCSFAMKLLILIVFSSPSENGGYVARVTINNFYQYRHVEKPGWQIGWGWGNGEIILKIAGAYATDSGDCKNFAALKPHCCKQNPIIADLWPGG ASTQGTNEVEGCCKSGVISAWAIDPSQSSSAFEITVGNLPPNSSHPPANLTLFVPGLGYTCGPIQDSDPTVFLDYGGRRKIRAFRTMKSVCTYSSFLANR APTCCVSLSTFYSPEITNCPKCSCGCRDSASDGISCSSQSSASYSGNAVDKLQCTDHMCPVRVHWHVKNSYTKYWRVKLTISNYNLQKNYSDWNAVIQHP GFRKKAISYSFNSTTLPTVGIEDEVALFWGLAYYNSELTEANDFEMGSVTTDIILEKDSDSFTLSNGWALPRRVFFGGEECQMPLPDSYPMLPNGATSLQ HQYSVLYLLLMMMMMVLPELRPWI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G29810		COBL2	COBRA-like protein 2 precursor...		Lus10026288 [exp]	0	1
					Lus10019052 [exp]	1.7	0.9809
AT1G04100	AUX_IAA	IAA10	indoleacetic acid-induced prot...		Lus10001501 [exp]	17.7	0.9786
AT4G17970		ATALMT12, ALMT1...	"aluminum-activated, malate tr...		Lus10004556 [exp]	21.7	0.9773
AT1G65330	MADS	AGL37, PHE1	PHERES1, AGAMOUS-like 37, MADS...		Lus10004150 [exp]	23.0	0.9683
AT3G43860		ATGH9A4	glycosyl hydrolase 9A4 (.1)		Lus10038075 [exp]	23.5	0.9765
AT5G04885			Glycosyl hydrolase family prot...		Lus10013388 [exp]	25.0	0.9570
AT5G17230		PSY	PHYTOENE SYNTHASE (.1.2.3)		Lus10039186 [exp]	28.1	0.9751
					Lus10010593 [exp]	28.5	0.9756
					Lus10039439 [exp]	31.4	0.9753
AT3G44540		FAR4	fatty acid reductase 4 (.1.2)		Lus10019187 [exp]	36.3	0.9748

Compare expression of checked genes

Lus10026288 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.