Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G44360 434 / 2e-147 FAD-binding Berberine family protein (.1) AT4G20860 427 / 5e-145 FAD-binding Berberine family protein (.1) AT5G44390 423 / 5e-143 FAD-binding Berberine family protein (.1) AT4G20820 419 / 8e-142 FAD-binding Berberine family protein (.1) AT5G44440 419 / 2e-141 FAD-binding Berberine family protein (.1) AT5G44400 413 / 2e-139 FAD-binding Berberine family protein (.1) AT1G30760 413 / 2e-139 FAD-binding Berberine family protein (.1) AT1G30710 412 / 7e-139 FAD-binding Berberine family protein (.1) AT5G44410 412 / 8e-139 FAD-binding Berberine family protein (.1) AT1G34575 407 / 4e-137 FAD-binding Berberine family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038446 [exp] 555 / 0 AT4G20860 520 / 0.0 FAD-binding Berberine family protein (.1) Lus10023361 [exp] 434 / 5e-147 AT2G34790 674 / 0.0 MATERNAL EFFECT EMBRYO ARREST 23, EMBRYO SAC DEVELOPMENT ARREST 28, FAD-binding Berberine family protein (.1) Lus10032943 [exp] 431 / 3e-146 AT4G20820 503 / 2e-174 FAD-binding Berberine family protein (.1) Lus10023363 [exp] 427 / 3e-145 AT2G34790 504 / 1e-175 MATERNAL EFFECT EMBRYO ARREST 23, EMBRYO SAC DEVELOPMENT ARREST 28, FAD-binding Berberine family protein (.1) Lus10012641 [exp] 420 / 5e-142 AT5G44440 518 / 2e-180 FAD-binding Berberine family protein (.1) Lus10038436 [exp] 411 / 1e-138 AT4G20820 508 / 1e-176 FAD-binding Berberine family protein (.1) Lus10036147 [exp] 411 / 2e-138 AT2G34790 626 / 0.0 MATERNAL EFFECT EMBRYO ARREST 23, EMBRYO SAC DEVELOPMENT ARREST 28, FAD-binding Berberine family protein (.1) Lus10039682 [exp] 409 / 1e-137 AT5G44440 481 / 9e-166 FAD-binding Berberine family protein (.1) Lus10026775 [exp] 407 / 3e-137 AT5G44390 448 / 5e-153 FAD-binding Berberine family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G161800 [exp] 533 / 0 AT5G44360 550 / 0.0 FAD-binding Berberine family protein (.1) Potri.001G464800 [exp] 479 / 4e-165 AT4G20820 526 / 0.0 FAD-binding Berberine family protein (.1) Potri.001G440700 [exp] 476 / 4e-164 AT4G20820 552 / 0.0 FAD-binding Berberine family protein (.1) Potri.001G462700 [exp] 476 / 4e-164 AT1G30760 525 / 0.0 FAD-binding Berberine family protein (.1) Potri.011G162800 [exp] 472 / 2e-162 AT5G44440 540 / 0.0 FAD-binding Berberine family protein (.1) Potri.011G162856 [exp] 471 / 4e-162 AT5G44440 545 / 0.0 FAD-binding Berberine family protein (.1) Potri.011G162666 [exp] 471 / 4e-162 AT5G44440 506 / 6e-176 FAD-binding Berberine family protein (.1) Potri.011G162968 [exp] 470 / 1e-161 AT4G20820 525 / 0.0 FAD-binding Berberine family protein (.1) Potri.011G162884 [exp] 468 / 9e-161 AT4G20820 527 / 0.0 FAD-binding Berberine family protein (.1) Potri.011G162900 [exp] 467 / 2e-160 AT4G20820 526 / 0.0 FAD-binding Berberine family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0077 [flax] [poplar] FAD_PCMH PF01565 [flax] [poplar] FAD_binding_4 FAD binding domain CL0277 [flax] [poplar] FAD-oxidase_C PF08031 [flax] [poplar] BBE Berberine and berberine like
Representative CDS sequence Show only first row Show all	>Lus10026290 pacid=23156606 polypeptide=Lus10026290 locus=Lus10026290.g ID=Lus10026290.BGIv1.0 annot-version=v1.0 ATGAAGGAGATGCTGGTATTCCTGATGATGATAATTTCAATTTCACCGTCGACAAGCTCCGGTCAAGTCGGTGACAATTTCGTGGATTGCATTTCAAACA ACGGCTCCTGCTCGTCGTCGTCAGGCTGGGTTTACGATCCAGAATCACCTCACTTCTCGTCAATTCTGGACTTCAAAATCCAGAACAAGAGATACTTGAC ATCAACTTCAAAACCTAACCTAATCTTGACTCCGTCCCACCATTGTCAAATTCAAGCAGCAATCCTCTGCGCCAAACAACAGTCTCTCCACATCCGAGTC CGTAGCGGCGGCCACGATTATGAAGGCCTCTCTTACCTCGCCCGCGGGAAAAAACCTTACATCATGATCGACCTTGTCAACCTTAACGCCGTGCATGTCG ACCCGGAAGCCGAGACCGCATGGGTACAGAGTGGGGCCCTGCTGGGTGACATCCACTACGCAATTGCCAAGCAGAGCAACGAACAACTTGGTTTCCCGGC GGGGGCCTGCCCCACGATTGGCGTCGGCGGACACCTCGGCGGCGGAGGATACGGAATCTTGGTTAGAAAGCACGGGATGGCGTCGGACAACGTGATTGAT GCTTACCTTGTGGATGCTCGTGGCAGAGTTCTTGACAGGGAAGCCATGGGGGAGGATGTTTTCTGGGCGATTCGAGGGGGTGGAGCTTCCAGCTTCGGGA TCGTCATTTCGTGGAAGCTAAAATTGGTGAGAGTTCCTTCGAAATTAACATTCTTCACAGTGAATAAGACGCTGGAGGAGGAAGAATCGGTTAAGCTTGT CGAGAAATGGCAGCGGTTTGCACACGACGCGCACGAGGATCTCTTCGTCAGGATTCTAATTCTTGGGGTTGAAGCTAGCTTCCAGACTCTGTTTCTGGGA CCGATTGACGGGCTAATCCCTCTGATGAACAACAACGATTTCTTCCGGGAGTTGGGGGTGAAAGGGGAGGATTGCAAAGAAGGGAGCTGGGCAGATTCCG TCCTCTATTTCGCTGGATACGATTCAGGGAATCCACCGCTGGAGATTCTGCTGGATAAAAAGACCACAAAGTACAAGGCATATTTCAAAAACAAATCGGA CTTCGTGACCGAACCGATACCGGAATCCGGTTTGGAAGGGATGTGGAAGCTTGCAGTGGAGGAGAAACATTTATCCTCATCATCCTCACCCATGGTCCTA CTGGAACCATGGGGAGGGAGGATGAACGAGATTCCGGAATCGTACACGCCTTTCCCGAACAGGAAAGGGCATCTTTACATCATTGAGTACATAGTGAGAT GGGGGCACAAGGAGGAAGAGGAGAGGCACCTTGAATGGATCAAGAAGCTTTACGACTACATGGAGCCTTACGTTTCAAAGTCCCCGAGGAGGGCGTATTT GAATTACAGGGATCTGGACATCGGGACCAACAATCTTGACACGACGACAAGCTTCTCGGAGGCGAGTGTGTGGGGAAGGAAGTACTTCTTGGACAATTTT GAGAAGTTGTGTAAGGTGAAGAGCATGATCGATCCTGACGATTTCTTCAACGATGAACAGAGCATTCCCTTGTTTAGTGTTTATCTGAGGGACAACTAG
AA sequence Show only first row Show all	>Lus10026290 pacid=23156606 polypeptide=Lus10026290 locus=Lus10026290.g ID=Lus10026290.BGIv1.0 annot-version=v1.0 MKEMLVFLMMIISISPSTSSGQVGDNFVDCISNNGSCSSSSGWVYDPESPHFSSILDFKIQNKRYLTSTSKPNLILTPSHHCQIQAAILCAKQQSLHIRV RSGGHDYEGLSYLARGKKPYIMIDLVNLNAVHVDPEAETAWVQSGALLGDIHYAIAKQSNEQLGFPAGACPTIGVGGHLGGGGYGILVRKHGMASDNVID AYLVDARGRVLDREAMGEDVFWAIRGGGASSFGIVISWKLKLVRVPSKLTFFTVNKTLEEEESVKLVEKWQRFAHDAHEDLFVRILILGVEASFQTLFLG PIDGLIPLMNNNDFFRELGVKGEDCKEGSWADSVLYFAGYDSGNPPLEILLDKKTTKYKAYFKNKSDFVTEPIPESGLEGMWKLAVEEKHLSSSSSPMVL LEPWGGRMNEIPESYTPFPNRKGHLYIIEYIVRWGHKEEEERHLEWIKKLYDYMEPYVSKSPRRAYLNYRDLDIGTNNLDTTTSFSEASVWGRKYFLDNF EKLCKVKSMIDPDDFFNDEQSIPLFSVYLRDN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G44390			FAD-binding Berberine family p...		Lus10026290 [exp]	0	1
AT1G09170			P-loop nucleoside triphosphate...		Lus10020682 [exp]	3.6	0.9371
AT5G22900		ATCHX3	cation/H+ exchanger 3, ARABIDO...		Lus10021412 [exp]	5.2	0.9358
AT2G29940		ABCG31, PDR3, A...	ATP-binding cassette G31, plei...		Lus10040676 [exp]	5.3	0.9371
AT5G27000		KATD, ATK4	KINESIN-LIKE PROTEIN IN ARABID...		Lus10029865 [exp]	7.1	0.9269
AT2G22620			Rhamnogalacturonate lyase fami...		Lus10004281 [exp]	7.7	0.9346
AT3G63410		VTE3, APG1, IEP...	VITAMIN E DEFECTIVE 3, INNER E...		Lus10003095 [exp]	7.9	0.8031
AT2G44480		BGLU17	beta glucosidase 17 (.1.2)		Lus10030576 [exp]	9.4	0.9109
AT1G67850			Protein of unknown function (D...		Lus10035229 [exp]	9.5	0.8985
AT4G26140		BGAL12	beta-galactosidase 12 (.1.2)		Lus10008974 [exp]	10.4	0.9216
AT3G54100			O-fucosyltransferase family pr...		Lus10027753 [exp]	10.9	0.9146

Compare expression of checked genes

Lus10026290 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.