Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G38810 479 / 3e-170 Calcium-binding EF-hand family protein (.1.2) AT5G28830 55 / 2e-08 calcium-binding EF hand family protein (.1) AT2G44310 52 / 3e-08 Calcium-binding EF-hand family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042380 [exp] 637 / 0 AT4G38810 463 / 2e-164 Calcium-binding EF-hand family protein (.1.2) Lus10007567 [exp] 564 / 0 AT4G38810 499 / 6e-178 Calcium-binding EF-hand family protein (.1.2) Lus10012178 [exp] 528 / 0 AT4G38810 468 / 5e-166 Calcium-binding EF-hand family protein (.1.2) Lus10009175 [exp] 79 / 3e-16 AT5G28830 281 / 2e-93 calcium-binding EF hand family protein (.1) Lus10015916 [exp] 79 / 4e-16 AT5G28830 281 / 6e-94 calcium-binding EF hand family protein (.1) Lus10035578 [exp] 46 / 8e-06 AT2G44310 182 / 3e-60 Calcium-binding EF-hand family protein (.1) Lus10008649 [exp] 44 / 4e-05 AT2G44310 177 / 2e-58 Calcium-binding EF-hand family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G127800 [exp] 528 / 0 AT4G38810 484 / 7e-172 Calcium-binding EF-hand family protein (.1.2) Potri.004G166900 [exp] 517 / 0 AT4G38810 520 / 0.0 Calcium-binding EF-hand family protein (.1.2) Potri.005G052900 [exp] 72 / 8e-14 AT5G28830 321 / 2e-109 calcium-binding EF hand family protein (.1) Potri.013G040500 [exp] 70 / 3e-13 AT5G28830 311 / 3e-105 calcium-binding EF hand family protein (.1) Potri.002G218300 [exp] 56 / 2e-09 AT2G44310 138 / 9e-43 Calcium-binding EF-hand family protein (.1) Potri.002G218201 [exp] 55 / 4e-09 AT2G44310 136 / 4e-42 Calcium-binding EF-hand family protein (.1) Potri.002G218500 [exp] 55 / 4e-09 AT2G44310 140 / 7e-44 Calcium-binding EF-hand family protein (.1) Potri.002G218700 [exp] 54 / 8e-09 AT2G44310 137 / 3e-42 Calcium-binding EF-hand family protein (.1) Potri.002G218750 [exp] 54 / 8e-09 AT2G44310 136 / 3e-42 Calcium-binding EF-hand family protein (.1) Potri.002G218725 [exp] 54 / 9e-09 AT2G44310 135 / 1e-41 Calcium-binding EF-hand family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10026291 pacid=23156567 polypeptide=Lus10026291 locus=Lus10026291.g ID=Lus10026291.BGIv1.0 annot-version=v1.0 ATGGACACGAGTATCAGCACCTACTCTACTGCTACTGCTGCTAATCATGGGCAGGTGTTGGACGGTTCGGATATAATGAATTTGGTTGGGAATGACAAAG TGTTTAGCACCTTCGTCGATCATAAGTTTTCACAGCTTGATAAAGACAGAGACGGCCACCTCTCCGTCACAGAACTCCGGCCTGCCGTCGCTGATATTGG CGCAGCCCTTGGCTTGCCTGCTCAAGGCTCTTCTTCCGAGTCGGATCTCATCTACTCCGAGGTTTTGAATGAGTTCACCCATGGCAGGCAAGGTAAAGTG AACAAGACTGTGTTTAAGGAGGTGCTTTCAGATATTCTGCTAGGCATGGCTGCGGGTTTGAAGAGAGACCCAGTGGTGATCCTTCGTATTGACGGAGAAG ACCTGCTAGAGTTCATCAATGGGCCGGGTTATGAACCAGAGATGGTTTCTATCTTCTCAGAGTTGGGTTCAGCTGATGATGTTTCACTCCATGTTTACAT AGTGAAAGCTTTCCAGAAACTTACAGTTGGTCACGGGTTACCTCCAGCTTCAGATTCTTGGGTAATAAGCAACTTACTGGAGCCATCACTGCAATCAATT GCTGGACAATATAACAACATACCGGTCTCTCAAGAGAAATTCTTGGACGCATTCAAGCAAGTATCGGAGTGTGTAGCTCAACATCTCAAAGAGCAGCCTG TGATTGTAGCACATAGCGAGAACACTTTCGACGGAAGTGGCATCAGGAGACTGCTATCCAACAAGTTTGAACTAGACAAGATGCTAAACTCGACTTTAGA AAATCTGAAAAGGGATCGGAGCAGGAAGATATCAAAAGAGTACTTGAGCATGGTTCTTGATTCGGTTGCTCCTTCTGCTGGTCTACCTCCTATTGGTGCA ATTGAAGAGATGGATCAGGTCATGAACGAAGCATTCAAGATGGTGGATGCAGATGATAGGAAGCAAGAGGTGAAGGAGGATGAGTTCAGGAAGATGGTGG TTGAGATCTTGGGAAGTATAATGTTGCAGTTAGAAGGAAATCCCATTTCAATCTCTTCAAACTCTATTGTCCATGAACCCCTTGAATCTGCATCCACACT TTTGCAGACATCTTCCTAG
AA sequence Show only first row Show all	>Lus10026291 pacid=23156567 polypeptide=Lus10026291 locus=Lus10026291.g ID=Lus10026291.BGIv1.0 annot-version=v1.0 MDTSISTYSTATAANHGQVLDGSDIMNLVGNDKVFSTFVDHKFSQLDKDRDGHLSVTELRPAVADIGAALGLPAQGSSSESDLIYSEVLNEFTHGRQGKV NKTVFKEVLSDILLGMAAGLKRDPVVILRIDGEDLLEFINGPGYEPEMVSIFSELGSADDVSLHVYIVKAFQKLTVGHGLPPASDSWVISNLLEPSLQSI AGQYNNIPVSQEKFLDAFKQVSECVAQHLKEQPVIVAHSENTFDGSGIRRLLSNKFELDKMLNSTLENLKRDRSRKISKEYLSMVLDSVAPSAGLPPIGA IEEMDQVMNEAFKMVDADDRKQEVKEDEFRKMVVEILGSIMLQLEGNPISISSNSIVHEPLESASTLLQTSS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G38810			Calcium-binding EF-hand family...		Lus10026291 [exp]	0	1
AT3G18990	B3	REM39, VRN1	REDUCED VERNALIZATION RESPONSE...		Lus10008529 [exp]	2.0	0.8866
AT3G44900		ATCHX4	cation/H+ exchanger 4, cation/...		Lus10032622 [exp]	4.0	0.8897
AT1G06475			unknown protein		Lus10025392 [exp]	6.0	0.8620
AT3G17220		ATPMEI2	pectin methylesterase inhibito...		Lus10017347 [exp]	9.6	0.8839
AT3G56180			Protein of unknown function (D...		Lus10040968 [exp]	15.1	0.8100
AT4G33920			Protein phosphatase 2C family ...		Lus10011521 [exp]	16.4	0.8216
					Lus10025141 [exp]	16.6	0.8700
AT3G57670	C2H2ZnF	WIP2, NTT	WIP domain protein 2, NO TRANS...		Lus10031838 [exp]	17.2	0.8582
AT5G48670	MADS	FEM111, AGL80	AGAMOUS-like 80 (.1)		Lus10022316 [exp]	17.4	0.8373
AT3G44735		PSK1, ATPSK3	PHYTOSULFOKINE 3 PRECURSOR (.1...		Lus10035572 [exp]	19.8	0.8588

Compare expression of checked genes

Lus10026291 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.