Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G61430 59 / 7e-11 ATPIP1, PIP1;1, PIP1A PLASMA MEMBRANE INTRINSIC PROTEIN 1;1, ARABIDOPSIS THALIANA PLASMA MEMBRANE INTRINSIC PROTEIN 1, plasma membrane intrinsic protein 1A (.1.2) AT4G23400 59 / 2e-10 PIP1D, PIP1;5 plasma membrane intrinsic protein 1;5 (.1) AT2G45960 59 / 2e-10 PIP1;2, ATHH2, TMP-A, PIP1B TRANSMEMBRANE PROTEIN A, NAMED PLASMA MEMBRANE INTRINSIC PROTEIN 1;2, plasma membrane intrinsic protein 1B (.1.2.3) AT1G73190 54 / 4e-09 ALPHA-TIP, TIP3;1 ALPHA-TONOPLAST INTRINSIC PROTEIN, Aquaporin-like superfamily protein (.1) AT4G00430 54 / 5e-09 PIP1;4, TMP-C, PIP1E TRANSMEMBRANE PROTEIN C, PLASMA MEMBRANE INTRINSIC PROTEIN 1E, plasma membrane intrinsic protein 1;4 (.1.2) AT1G01620 54 / 6e-09 TMP-B, PIP1C, PIP1;3 PLASMA MEMBRANE INTRINSIC PROTEIN 1;3, plasma membrane intrinsic protein 1C (.1.2) AT1G17810 53 / 1e-08 BETA-TIP beta-tonoplast intrinsic protein (.1) AT2G37180 52 / 3e-08 PIP2C, PIP2;3, RD28 RESPONSIVE TO DESICCATION 28, PLASMA MEMBRANE INTRINSIC PROTEIN 2C, PLASMA MEMBRANE INTRINSIC PROTEIN 2;3, Aquaporin-like superfamily protein (.1) AT4G17340 51 / 6e-08 TIP2;2, DELTA-TIP2 tonoplast intrinsic protein 2;2 (.1) AT4G01470 50 / 1e-07 ATTIP1.3, GAMMA-TIP3, TIP1;3 tonoplast intrinsic protein 1;3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042375 [exp] 278 / 5e-95 AT1G73190 104 / 3e-26 ALPHA-TONOPLAST INTRINSIC PROTEIN, Aquaporin-like superfamily protein (.1) Lus10007568 [exp] 83 / 3e-19 AT2G45960 108 / 3e-27 TRANSMEMBRANE PROTEIN A, NAMED PLASMA MEMBRANE INTRINSIC PROTEIN 1;2, plasma membrane intrinsic protein 1B (.1.2.3) Lus10042385 [exp] 69 / 2e-14 AT3G61430 94 / 1e-22 PLASMA MEMBRANE INTRINSIC PROTEIN 1;1, ARABIDOPSIS THALIANA PLASMA MEMBRANE INTRINSIC PROTEIN 1, plasma membrane intrinsic protein 1A (.1.2) Lus10040652 [exp] 56 / 2e-09 AT1G17810 367 / 2e-129 beta-tonoplast intrinsic protein (.1) Lus10019934 [exp] 56 / 2e-09 AT2G37170 474 / 6e-171 PLASMA MEMBRANE INTRINSIC PROTEIN 2;2, plasma membrane intrinsic protein 2 (.1) Lus10014840 [exp] 56 / 3e-09 AT2G45960 461 / 1e-165 TRANSMEMBRANE PROTEIN A, NAMED PLASMA MEMBRANE INTRINSIC PROTEIN 1;2, plasma membrane intrinsic protein 1B (.1.2.3) Lus10018256 [exp] 55 / 3e-09 AT1G17810 370 / 7e-131 beta-tonoplast intrinsic protein (.1) Lus10035483 [exp] 55 / 4e-09 AT2G45960 520 / 0.0 TRANSMEMBRANE PROTEIN A, NAMED PLASMA MEMBRANE INTRINSIC PROTEIN 1;2, plasma membrane intrinsic protein 1B (.1.2.3) Lus10036187 [exp] 54 / 6e-09 AT1G73190 382 / 4e-135 ALPHA-TONOPLAST INTRINSIC PROTEIN, Aquaporin-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G128100 [exp] 128 / 5e-37 AT1G73190 91 / 1e-21 ALPHA-TONOPLAST INTRINSIC PROTEIN, Aquaporin-like superfamily protein (.1) Potri.004G167000 [exp] 88 / 4e-21 AT3G61430 96 / 6e-23 PLASMA MEMBRANE INTRINSIC PROTEIN 1;1, ARABIDOPSIS THALIANA PLASMA MEMBRANE INTRINSIC PROTEIN 1, plasma membrane intrinsic protein 1A (.1.2) Potri.009G128000 [exp] 83 / 3e-19 AT4G23400 100 / 3e-24 plasma membrane intrinsic protein 1;5 (.1) Potri.009G128300 [exp] 81 / 2e-18 AT3G61430 93 / 6e-22 PLASMA MEMBRANE INTRINSIC PROTEIN 1;1, ARABIDOPSIS THALIANA PLASMA MEMBRANE INTRINSIC PROTEIN 1, plasma membrane intrinsic protein 1A (.1.2) Potri.009G127900 [exp] 80 / 3e-18 AT2G45960 107 / 6e-27 TRANSMEMBRANE PROTEIN A, NAMED PLASMA MEMBRANE INTRINSIC PROTEIN 1;2, plasma membrane intrinsic protein 1B (.1.2.3) Potri.009G128500 [exp] 77 / 5e-17 AT4G23400 85 / 6e-19 plasma membrane intrinsic protein 1;5 (.1) Potri.003G128600 [exp] 57 / 8e-10 AT4G00430 514 / 0.0 TRANSMEMBRANE PROTEIN C, PLASMA MEMBRANE INTRINSIC PROTEIN 1E, plasma membrane intrinsic protein 1;4 (.1.2) Potri.008G065600 [exp] 56 / 1e-09 AT4G00430 514 / 0.0 TRANSMEMBRANE PROTEIN C, PLASMA MEMBRANE INTRINSIC PROTEIN 1E, plasma membrane intrinsic protein 1;4 (.1.2) Potri.010G191900 [exp] 56 / 2e-09 AT4G00430 509 / 0.0 TRANSMEMBRANE PROTEIN C, PLASMA MEMBRANE INTRINSIC PROTEIN 1E, plasma membrane intrinsic protein 1;4 (.1.2) Potri.017G154800 [exp] 54 / 5e-09 AT1G17810 372 / 1e-131 beta-tonoplast intrinsic protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00230 [flax] [poplar] MIP Major intrinsic protein
Representative CDS sequence Show only first row Show all	>Lus10026295 pacid=23156520 polypeptide=Lus10026295 locus=Lus10026295.g ID=Lus10026295.BGIv1.0 annot-version=v1.0 ATGGCTAAATTCCAAGATGTCAGGCATGATGACGCTAATGGACGCCTACCCATTCATCAGAGTTCAATGGATGCTGGCGCCAACAAATCAACCAGCAGGC AGGATTTCATGCGCCGCATTGGTGCTCATGAACTCTCTACCAAGAGTATGTGGAGAGCGGCAGTGGCGGAGATGGTAGCTTCGGCGTGTCTACTCTTCTC CCTTACAACAACAATAACCTCTTGCTTCCGATCCCCCCTACCAAATCCAATCCTCATCCCGATTTTCATTTTCATCTCCGCATTCCCACTCCTTCTCGGA ACAATCCCAATCTCCGGCGGCCACATGAACCCTGTTTTCACCTTCGCCTTTGCCCTTAACGGCTCCGTCTCCGCTGTCCGCGCCTTCTTTTACATAATTG CTCAGCTCCTCGGCTCTTTAATCGCCTTCGCCGTCGTCAAGGGCACCATGGACGGCGAATCCGCCGCCAAGTTCAATTTGGGGGGCTGCTTTGTCGACGC ACACGGCGACGGATCCGGGCCACTGTGA
AA sequence Show only first row Show all	>Lus10026295 pacid=23156520 polypeptide=Lus10026295 locus=Lus10026295.g ID=Lus10026295.BGIv1.0 annot-version=v1.0 MAKFQDVRHDDANGRLPIHQSSMDAGANKSTSRQDFMRRIGAHELSTKSMWRAAVAEMVASACLLFSLTTTITSCFRSPLPNPILIPIFIFISAFPLLLG TIPISGGHMNPVFTFAFALNGSVSAVRAFFYIIAQLLGSLIAFAVVKGTMDGESAAKFNLGGCFVDAHGDGSGPL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G61430		ATPIP1, PIP1;1,...	PLASMA MEMBRANE INTRINSIC PROT...		Lus10026295 [exp]	0	1
AT5G64820			unknown protein		Lus10025572 [exp]	7.8	0.9981
AT5G26330			Cupredoxin superfamily protein...		Lus10006680 [exp]	11.0	0.9981
AT4G16295		SPH1	S-protein homologue 1 (.1)		Lus10042506 [exp]	11.5	0.9952
					Lus10010414 [exp]	13.5	0.9981
AT2G22620			Rhamnogalacturonate lyase fami...		Lus10010628 [exp]	15.6	0.9981
AT4G36670		AtPMT6, AtPLT6	polyol/monosaccharide transpor...		Lus10017474 [exp]	17.5	0.9981
AT5G02030	HD	PNY, BLR, BLH9,...	VAAMANA, REPLUMLESS, PENNYWISE...		Lus10004688 [exp]	18.6	0.9926
AT4G18360			Aldolase-type TIM barrel famil...		Lus10038144 [exp]	19.1	0.9981
					Lus10038707 [exp]	20.7	0.9981
AT2G42560			late embryogenesis abundant do...		Lus10002197 [exp]	20.9	0.9887

Compare expression of checked genes

Lus10026295 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.