Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G10990 102 / 2e-28 SAUR-like auxin-responsive protein family (.1) AT1G19840 101 / 7e-28 SAUR-like auxin-responsive protein family (.1) AT1G75590 100 / 2e-27 SAUR-like auxin-responsive protein family (.1) AT4G34750 96 / 9e-26 SAUR-like auxin-responsive protein family (.1.2) AT2G24400 70 / 2e-15 SAUR-like auxin-responsive protein family (.1) AT1G76190 62 / 6e-13 SAUR-like auxin-responsive protein family (.1) AT4G31320 62 / 1e-12 SAUR-like auxin-responsive protein family (.1) AT4G34760 58 / 2e-11 SAUR-like auxin-responsive protein family (.1) AT3G43120 58 / 4e-11 SAUR-like auxin-responsive protein family (.1) AT1G56150 57 / 4e-11 SAUR-like auxin-responsive protein family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042374 [exp] 198 / 3e-66 AT5G10990 125 / 8e-38 SAUR-like auxin-responsive protein family (.1) Lus10034507 [exp] 115 / 3e-33 AT1G75590 189 / 1e-62 SAUR-like auxin-responsive protein family (.1) Lus10012190 [exp] 113 / 2e-32 AT4G34750 147 / 4e-46 SAUR-like auxin-responsive protein family (.1.2) Lus10033161 [exp] 110 / 1e-31 AT1G75590 187 / 4e-62 SAUR-like auxin-responsive protein family (.1) Lus10012426 [exp] 106 / 5e-30 AT1G75590 181 / 2e-59 SAUR-like auxin-responsive protein family (.1) Lus10007552 [exp] 79 / 1e-19 AT1G75590 70 / 3e-16 SAUR-like auxin-responsive protein family (.1) Lus10024322 [exp] 76 / 3e-18 AT1G75590 152 / 3e-48 SAUR-like auxin-responsive protein family (.1) Lus10026977 [exp] 65 / 1e-13 AT2G24400 184 / 1e-59 SAUR-like auxin-responsive protein family (.1) Lus10034570 [exp] 58 / 2e-11 AT1G76190 122 / 2e-37 SAUR-like auxin-responsive protein family (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G164300 [exp] 127 / 2e-38 AT5G10990 170 / 3e-55 SAUR-like auxin-responsive protein family (.1) Potri.009G125900 [exp] 124 / 4e-37 AT5G10990 157 / 5e-50 SAUR-like auxin-responsive protein family (.1) Potri.005G237000 [exp] 110 / 1e-31 AT1G75590 200 / 4e-67 SAUR-like auxin-responsive protein family (.1) Potri.002G024500 [exp] 107 / 2e-30 AT1G75590 194 / 1e-64 SAUR-like auxin-responsive protein family (.1) Potri.006G278100 [exp] 69 / 3e-15 AT2G24400 179 / 5e-58 SAUR-like auxin-responsive protein family (.1) Potri.018G132400 [exp] 64 / 2e-13 AT3G43120 64 / 2e-13 SAUR-like auxin-responsive protein family (.1) Potri.006G070600 [exp] 61 / 4e-12 AT5G18060 61 / 6e-13 SAUR-like auxin-responsive protein family (.1) Potri.015G006800 [exp] 59 / 5e-12 AT2G46690 128 / 2e-39 SAUR-like auxin-responsive protein family (.1) Potri.012G023400 [exp] 59 / 7e-12 AT2G46690 125 / 4e-38 SAUR-like auxin-responsive protein family (.1) Potri.010G253800 [exp] 60 / 9e-12 AT2G24400 142 / 4e-43 SAUR-like auxin-responsive protein family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02519 [flax] [poplar] Auxin_inducible Auxin responsive protein
Representative CDS sequence Show only first row Show all	>Lus10026297 pacid=23156564 polypeptide=Lus10026297 locus=Lus10026297.g ID=Lus10026297.BGIv1.0 annot-version=v1.0 ATGTCGAAGTTGAACAAAATCCGCCACATCGTCAGAATCCAGCAGATGCTTAAGCACTGGCGCCACAAAGCCAGAGCCAATAATAAGGCCACCTTATCGT CCTCCTCCTCCTCCGATTCCTCATCATCATCATCACCCGAAGTCCCCGCCGGACACGTGGCGGTCCACGTCGGAGCGAGCGGCCAGAGGTTCGTCGTCCG AGCCAGGTACCTCAACCATCCGATTTTCCAGAGCATTCTCGCGCGGGCAGAGGAAGAGTACGGATTCAAGAACGACGGGCCGTTGCGGATCCCTTGCGAG GAGTGGGAGTTCGAGGAGATTCTCCGATTCGTGTCGAGATCGGATTCTAATAAGTTTGTGAATAATAACTATAATAATAGTCGATGCTCTTATTCTTGTA ATCATTCGGAGCTAGTCGGCCCTCCTTCCGGGAGGCCTTTACTCCGTGGTTGA
AA sequence Show only first row Show all	>Lus10026297 pacid=23156564 polypeptide=Lus10026297 locus=Lus10026297.g ID=Lus10026297.BGIv1.0 annot-version=v1.0 MSKLNKIRHIVRIQQMLKHWRHKARANNKATLSSSSSSDSSSSSSPEVPAGHVAVHVGASGQRFVVRARYLNHPIFQSILARAEEEYGFKNDGPLRIPCE EWEFEEILRFVSRSDSNKFVNNNYNNSRCSYSCNHSELVGPPSGRPLLRG

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G10990			SAUR-like auxin-responsive pro...		Lus10026297 [exp]	0	1
AT3G60380			unknown protein		Lus10028193 [exp]	3.6	0.7189
AT5G20900	ZIM	TIFY3B, JAZ12	jasmonate-zim-domain protein 1...		Lus10011929 [exp]	6.5	0.6629
AT1G63250			DEA(D/H)-box RNA helicase fami...		Lus10019121 [exp]	13.3	0.6089
AT5G67320		HOS15	high expression of osmotically...		Lus10024972 [exp]	21.1	0.6587
					Lus10027487 [exp]	25.9	0.5950
AT1G06210			ENTH/VHS/GAT family protein (....		Lus10022922 [exp]	37.2	0.6449
AT2G02370			SNARE associated Golgi protein...		Lus10012163 [exp]	40.6	0.5714
					Lus10015452 [exp]	53.1	0.5675
AT5G64610		HAM1	histone acetyltransferase of t...		Lus10012707 [exp]	53.7	0.5588
AT5G02220			unknown protein		Lus10001570 [exp]	59.0	0.5586

Compare expression of checked genes

Lus10026297 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.