Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G41830 1067 / 0 Uncharacterized protein (.1) AT5G21080 940 / 0 Uncharacterized protein (.1) AT1G05960 703 / 0 ARM repeat superfamily protein (.1.2) AT5G26850 562 / 0 Uncharacterized protein (.1.2.3.4)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042372 [exp] 1357 / 0 AT2G41830 840 / 0.0 Uncharacterized protein (.1) Lus10001161 [exp] 759 / 0 AT1G05960 999 / 0.0 ARM repeat superfamily protein (.1.2) Lus10006583 [exp] 747 / 0 AT1G05960 960 / 0.0 ARM repeat superfamily protein (.1.2) Lus10019717 [exp] 592 / 0 AT2G41830 1012 / 0.0 Uncharacterized protein (.1) Lus10029842 [exp] 560 / 0 AT5G26850 1115 / 0.0 Uncharacterized protein (.1.2.3.4) Lus10020697 [exp] 546 / 1e-178 AT5G26850 1103 / 0.0 Uncharacterized protein (.1.2.3.4) Lus10016400 [exp] 478 / 2e-152 AT5G21080 538 / 5e-175 Uncharacterized protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G052100 [exp] 1249 / 0 AT2G41830 1110 / 0.0 Uncharacterized protein (.1) Potri.016G055100 [exp] 1239 / 0 AT2G41830 1184 / 0.0 Uncharacterized protein (.1) Potri.007G128000 [exp] 849 / 0 AT1G05960 1014 / 0.0 ARM repeat superfamily protein (.1.2) Potri.013G008500 [exp] 586 / 0 AT5G26850 1132 / 0.0 Uncharacterized protein (.1.2.3.4)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10026298 pacid=23156435 polypeptide=Lus10026298 locus=Lus10026298.g ID=Lus10026298.BGIv1.0 annot-version=v1.0 ATGAGTGCTGTTTCTGCTGTTTTATCGCGCCAAGTATTACCAGCGTGCGGTAGCCTTTGTTTCTTTTGCCCTGGATTGAGGGCCAGGTCTAGACAGCCTA TCAAGAGGTACAAGAAGCTCATTAGTGACATCTTCCCCAAGAATAAGGAAGAAGCACCTAATGACAGGAAGATCTCTAAACTTTGTGAATATGCAGCTAA AAATCCTCTGCGCATACCAAAGATTGCAAACTCGCTTGAGCAAAGGTGTTACAAGGAGCTGAGATATGAGAATTTTCACTCTGTTCAGATTGTAATGTGC ATTTATAAAAAATTGCTGATCATTTGCAATGAGCAAATGCCTTTGTTTGCTACTAGTTTAATGAGCATTATTCATACCCTACTCGAACAGACACGGAGAC AAGATTTGCAACTTACAGGATGTCAGTCTCTTTTTGACTTTGTAAATAATCAGAAAGATGGAACTTACGCATTTAATTTAGAAGGCTTCATACTGCAACT CTGTCAGTTAGCTCAAGAAGTAGGAGAAGATGAAAGAGCAGTTCATCTACGTGCAGCTGGTCTTCAGGCTCTTTCTTCAGTGGTTTGGTTTATGGGCGAA CATTCACATATTTCAGCGGAGTTTGACAATATTGTGTCAGTTGTTTTGGAAAATTATGGACATCCTAAGGATGCCTCTGATGATCTTGATGCTGGCAAGC AAGATAGGAAGAACCAATGGGAACAAGAAGTGATAAATCAGGATCAGCGGCCTACTCCGTCTGAAACCCTTGTGAGGGTACCATCCTGGGGAACACTTGT AAACGAAAGAGGAGAATTGAATGTCACAGCACAAGATGCCCGAAACCCGTGCTTTTGGGCTAGGATTTGCTTACAGAACATGGCCAAGCTCGGACAGGAG GCTACAAACATTCGACACATTCTGGAATCCTTATTTCGGTACTTCGATAATAGTGACCTGTGGTCTCTTGACCATGGTTTTGCACTTCCAGTATTGAATG ATATGCAAATTTTGATGGAAAAGTCTGGGTACAATTCACATGTTCTGCTGTCCATGTTGATTAAGCATCTGGATCACAAAACTGTCGTGAAAGACCCAAA CATGCAGCTAGACGTATTGAATGTTACCACCTCACTAGCTCAGCAAGCAAAGACTGAGTCCTCTATAGAAATTATTGGTGCAGTGAGTGATCTAATAAGG CATTTAAGGAAGAGCATACATTGCTCAGTTGATGATGCAAACCTTGACGATGGAGGTAAGAGTCGGAACAACAACTTACGAGAAGCAGTGGATAAATGCC TCGTGGGATTGTCAACTAAGGTGGTTGGGGATGCAGGCCCGATTCTTGAAATGATGGCTGTGGTACTGGAGAATCTTTCAACTGTTACAGTTATTGCAAG GACAACAATTTCTTCTGTTTATCGGACCGCTCAGATAGTTGCATCATTGCCAGATTTGCATTATCAAAATAAGACATTTCCCGAGGCTTTATTTCATCAG CTGCTTCTGGTTATGGTCCATCCTGACCACGAGACAAGAGTTGGAGCTCATCGTATATTTTCTGTTGTTCTAGTCCCGTCTTCTTTTTGTCCTCGACCAA GTTCAACTTGTCTTGATATGAAGACACAAGCTGAAGTTGAGCGGCAACTCTCAAGAACAGTATCCGTTTTTTCTTCATCGGCTGCCCTTTTTGAGAAGAT AAAGAAGGAGAAAGCTTCCAGCAGGTCTGGAGGGAAAATGCAAAATGGGATGCTTGACAGATTGCGCTCATCTGCCAGTATGGAAAGCAATGTGCCCACA TTTTCTGATGAAAAGACAGTGGCCAACCTAAATAAGGTGACAGAAGTCACTATTTTGAGGCTCAGCAGTCACCAAATTAGTCTCTTACTGACATCAATCT GGGCGCAGTCAATTTCTCCTGATAATGTGCCTGAAAACTATGAAGCAATCTCTAATACGTTTAGCCTGGTGCTATTATTTTCCCGGGGAAAGAATTCCAG TCATGAGGTTTTAGTACGCAGTTTTCAGCTTGCCTTCTCCTTGAGAAACATTGCTGTCAGTGATGAAGGTCTTTTACCTGCGCCTCATCGCAGGTCACTT TATACCTTGGCAAATGCCATGATTCTGTTTTCATCAAAGGCATATGGCATTGTTCCCCTAGTAGCATCTGCCAAGGCAGTACTCACAGAAAAAATGATAG ATCCATTCTTACATCTAGTTGAGGATCGCAAGCTAGAAGCTGTAAGTGGTGAAACTGCCAGCCAAAAAGTTGCATTTGGATCTAAGGATGACGGTGACGT GGCTTCCAAAGCAATTTCATCTGTAAGCATCGCTGGGGAACAAAGCAGGGATTTCTTTGCAGCGGAGATTGCGAAGAGCTTGTCAGAATCTGAAATGTCT ATTGTCAAGAAGCAGCTCCTCGAAGAGTTCTTACCAGATGATGCTTGTCCGTTGCCAGCTCCAACACGCAAGGGTACTGGTCAGAACACTGATGATCACG TTGTTGGTGCCAAGGACCACAACCCGTTTCAGGAGAGTGAAGAAGCTTTTATAGAGTCACTGGAAGAAGGGCCAACCAATCAGAACAAGGAGCCAGCAGT GGAGAGCCCTGATGTTCTGAGTGTTAATGAACTGATTGAATCTGCATTGGAGACAGCAAACCAAGTTGGAAGAATTTCAGTAAGCGCCACGCCAGAAGTT TCTTATAAGCAAATGGCCCTTCATTGTGAGCAACTCTTGATGGGAAAGCAGAAGAAGATGTCTAGCGTGATGACTCTGCACTTGAGACAGGGGAGCTTTC CTTCGGTTGACAACAACTCCAGTGCAATCCCGGAACGACCACCCATTCTCCCAGTTGCTTTGCAATGTTCAACTGAGTATCAAAATCAGGGCAACTCATT TCGCCTACCGGCATCTAGTCCATTCGACAACTTCCTAAAAGCTGCTGGATGCTGA
AA sequence Show only first row Show all	>Lus10026298 pacid=23156435 polypeptide=Lus10026298 locus=Lus10026298.g ID=Lus10026298.BGIv1.0 annot-version=v1.0 MSAVSAVLSRQVLPACGSLCFFCPGLRARSRQPIKRYKKLISDIFPKNKEEAPNDRKISKLCEYAAKNPLRIPKIANSLEQRCYKELRYENFHSVQIVMC IYKKLLIICNEQMPLFATSLMSIIHTLLEQTRRQDLQLTGCQSLFDFVNNQKDGTYAFNLEGFILQLCQLAQEVGEDERAVHLRAAGLQALSSVVWFMGE HSHISAEFDNIVSVVLENYGHPKDASDDLDAGKQDRKNQWEQEVINQDQRPTPSETLVRVPSWGTLVNERGELNVTAQDARNPCFWARICLQNMAKLGQE ATNIRHILESLFRYFDNSDLWSLDHGFALPVLNDMQILMEKSGYNSHVLLSMLIKHLDHKTVVKDPNMQLDVLNVTTSLAQQAKTESSIEIIGAVSDLIR HLRKSIHCSVDDANLDDGGKSRNNNLREAVDKCLVGLSTKVVGDAGPILEMMAVVLENLSTVTVIARTTISSVYRTAQIVASLPDLHYQNKTFPEALFHQ LLLVMVHPDHETRVGAHRIFSVVLVPSSFCPRPSSTCLDMKTQAEVERQLSRTVSVFSSSAALFEKIKKEKASSRSGGKMQNGMLDRLRSSASMESNVPT FSDEKTVANLNKVTEVTILRLSSHQISLLLTSIWAQSISPDNVPENYEAISNTFSLVLLFSRGKNSSHEVLVRSFQLAFSLRNIAVSDEGLLPAPHRRSL YTLANAMILFSSKAYGIVPLVASAKAVLTEKMIDPFLHLVEDRKLEAVSGETASQKVAFGSKDDGDVASKAISSVSIAGEQSRDFFAAEIAKSLSESEMS IVKKQLLEEFLPDDACPLPAPTRKGTGQNTDDHVVGAKDHNPFQESEEAFIESLEEGPTNQNKEPAVESPDVLSVNELIESALETANQVGRISVSATPEV SYKQMALHCEQLLMGKQKKMSSVMTLHLRQGSFPSVDNNSSAIPERPPILPVALQCSTEYQNQGNSFRLPASSPFDNFLKAAGC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G41830			Uncharacterized protein (.1)		Lus10026298 [exp]	0	1
AT1G51590		MNS1, MANIB	ALPHA-MANNOSIDASE IB, alpha-ma...		Lus10034820 [exp]	1.0	0.8929
AT3G45850			P-loop containing nucleoside t...		Lus10036146 [exp]	3.9	0.8808
AT4G24550			Clathrin adaptor complexes med...		Lus10003537 [exp]	4.2	0.8711
AT2G46180		GC4	golgin candidate 4 (.1)		Lus10041081 [exp]	5.1	0.8852
AT4G02030			Vps51/Vps67 family (components...		Lus10041387 [exp]	5.5	0.8767
AT5G35560			DENN (AEX-3) domain-containing...		Lus10033443 [exp]	5.8	0.8138
AT4G36210			Protein of unknown function (D...		Lus10028363 [exp]	5.9	0.8612
AT1G18470			Transmembrane Fragile-X-F-asso...		Lus10021710 [exp]	6.5	0.8304
AT2G38250	Trihelix		Homeodomain-like superfamily p...		Lus10002481 [exp]	7.5	0.8122
AT2G16920		UBC23 ,PFU2	PHO2 FAMILY UBIQUITIN CONJUGAT...		Lus10025070 [exp]	7.9	0.8443

Compare expression of checked genes

Lus10026298 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.