Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G07970 385 / 3e-132 QRT2 QUARTET 2, Pectin lyase-like superfamily protein (.1) AT3G57510 380 / 2e-130 ADPG1 Pectin lyase-like superfamily protein (.1) AT2G41850 380 / 2e-130 ADPG2, PGAZAT ARABIDOPSIS DEHISCENCE ZONE POLYGALACTURONASE 2, polygalacturonase abscission zone A. thaliana (.1) AT1G80170 305 / 1e-100 Pectin lyase-like superfamily protein (.1) AT1G70500 288 / 5e-94 Pectin lyase-like superfamily protein (.1) AT1G23460 276 / 3e-89 Pectin lyase-like superfamily protein (.1) AT3G15720 259 / 1e-82 Pectin lyase-like superfamily protein (.1.2) AT1G56710 253 / 2e-80 Pectin lyase-like superfamily protein (.1) AT2G43890 250 / 7e-80 Pectin lyase-like superfamily protein (.1) AT5G14650 242 / 3e-76 Pectin lyase-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042371 [exp] 650 / 0 AT3G07970 432 / 5e-149 QUARTET 2, Pectin lyase-like superfamily protein (.1) Lus10029511 [exp] 419 / 9e-145 AT3G07970 480 / 1e-167 QUARTET 2, Pectin lyase-like superfamily protein (.1) Lus10019711 [exp] 400 / 6e-138 AT3G07970 461 / 1e-160 QUARTET 2, Pectin lyase-like superfamily protein (.1) Lus10036084 [exp] 292 / 2e-95 AT1G80170 491 / 2e-172 Pectin lyase-like superfamily protein (.1) Lus10030602 [exp] 274 / 8e-88 AT1G23460 624 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10032875 [exp] 245 / 7e-78 AT3G15720 342 / 3e-114 Pectin lyase-like superfamily protein (.1.2) Lus10029139 [exp] 243 / 5e-77 AT1G23460 574 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10011419 [exp] 240 / 5e-76 AT2G43870 507 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10002123 [exp] 239 / 1e-75 AT2G43870 498 / 5e-177 Pectin lyase-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G052700 [exp] 487 / 4e-172 AT3G07970 449 / 7e-156 QUARTET 2, Pectin lyase-like superfamily protein (.1) Potri.016G054800 [exp] 468 / 2e-164 AT2G41850 421 / 7e-145 ARABIDOPSIS DEHISCENCE ZONE POLYGALACTURONASE 2, polygalacturonase abscission zone A. thaliana (.1) Potri.009G060400 [exp] 423 / 8e-147 AT3G07970 514 / 0.0 QUARTET 2, Pectin lyase-like superfamily protein (.1) Potri.001G171900 [exp] 327 / 4e-109 AT1G80170 506 / 1e-178 Pectin lyase-like superfamily protein (.1) Potri.008G211900 [exp] 284 / 2e-92 AT1G23460 638 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.001G463000 [exp] 281 / 4e-91 AT1G23460 634 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.011G159000 [exp] 277 / 2e-89 AT1G23460 667 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.009G169100 [exp] 263 / 2e-84 AT4G18180 563 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.015G088600 [exp] 254 / 2e-81 AT1G70500 323 / 1e-106 Pectin lyase-like superfamily protein (.1) Potri.002G190600 [exp] 253 / 3e-80 AT1G02460 582 / 0.0 Pectin lyase-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0268 [flax] [poplar] Pec_lyase-like PF00295 [flax] [poplar] Glyco_hydro_28 Glycosyl hydrolases family 28
Representative CDS sequence Show only first row Show all	>Lus10026299 pacid=23156427 polypeptide=Lus10026299 locus=Lus10026299.g ID=Lus10026299.BGIv1.0 annot-version=v1.0 ATGTCATTGACCTCTACACTGCGCGACGGAACCTCAAGTGTACAACACAATACATTGGAGAAAGCATGGGATGCAGCGTGCAAGTCGTCTGGGAAAGGAG CAGTGCACTTGGTTGTGCCGGCCAAGAAGAGCTACACACTCCGGCCGATTAGGTTCTCAGGTCCGTGCAAATCCAAACTGACGGTTGAGATTTCCGGAAC CATCCAGGCCTCCGATGACCGGTCGGATTATGCGGAGGACAGGAGCCACTGGCTAGTGTTTGATGGCGTCCAGAATTTGGTAGTCCAAGGTGATGGCACC ATTGATGGGCACGGCAAAGTTTGGTGGCAAAACTCTTGCAAACCATGCAAGAAAGCACCAACGGCTGTGACATTCTACAAATGCAACAACTTGGTGGTGA AGAACCTAAGGATCCAAAACGCACAGCAAATGCACCTCTCCTTCCAAAGCTGCAACAACGTCCAAGCCTCCAACCTCCAAGTGAATTCCCCACAGGACAG CCCTAACACCGACGGAATCCACGTCACCGCCACCCAAAACATCAGAATCTCCAACTCCGTCATCGGAACAGGGGACGACTGCATCTCCATCGTCAGCGGC TCCAAAAACGTGGAAGCCGACAGCATCACCTGCGGCCCGGGCCACGGCATCAGCATCGGAAGCCTCGGGTCCCACAGCTCCGAGGCTTACGTGTCAGGGG TCAGCGTCAATGGCGCCAAGTTCTCCGGAACATCTAACGGCCTGAGGATCAAGACGTGGCAGGGCGGGTCGGGCAGTGCTACCAACATCAAGTTTCAAAA TGTTGAGATGGATAATGTGGAGAACCCCATTATTATTGATCAGAGCTACTGCGATCAGGACAAACCCTGCAAACGACAGAAATCTGCGATACAGGTAAAA GACGTGGTGTATAAGAATATAAAAGGGACGAGTGCTTCGGAGGTGGCCATAAAATTCGACTGCAGCAAGAGCTTCCCTTGCGAGGGAGTAGTGCTTGAAG ATGTTCATCTGGAGAGGGGAGGTTCTGATGATGTGAAGGAAGCCAAAGCACTTTGCAACAATGTTAAGTTGACTGAACTTGGAGCCGTTTCTCCAAGTTG TCAATGA
AA sequence Show only first row Show all	>Lus10026299 pacid=23156427 polypeptide=Lus10026299 locus=Lus10026299.g ID=Lus10026299.BGIv1.0 annot-version=v1.0 MSLTSTLRDGTSSVQHNTLEKAWDAACKSSGKGAVHLVVPAKKSYTLRPIRFSGPCKSKLTVEISGTIQASDDRSDYAEDRSHWLVFDGVQNLVVQGDGT IDGHGKVWWQNSCKPCKKAPTAVTFYKCNNLVVKNLRIQNAQQMHLSFQSCNNVQASNLQVNSPQDSPNTDGIHVTATQNIRISNSVIGTGDDCISIVSG SKNVEADSITCGPGHGISIGSLGSHSSEAYVSGVSVNGAKFSGTSNGLRIKTWQGGSGSATNIKFQNVEMDNVENPIIIDQSYCDQDKPCKRQKSAIQVK DVVYKNIKGTSASEVAIKFDCSKSFPCEGVVLEDVHLERGGSDDVKEAKALCNNVKLTELGAVSPSCQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G07970		QRT2	QUARTET 2, Pectin lyase-like s...		Lus10026299 [exp]	0	1
AT4G12910		SCPL20	serine carboxypeptidase-like 2...		Lus10025859 [exp]	4.1	0.9150
AT5G45970		ATRAC2, ATROP7,...	RHO-RELATED PROTEIN FROM PLANT...		Lus10025431 [exp]	4.9	0.9069
AT2G40120			Protein kinase superfamily pro...		Lus10040203 [exp]	5.8	0.8960
AT3G53520		ATUXS1, UXS1	UDP-glucuronic acid decarboxyl...		Lus10024436 [exp]	14.4	0.9099
AT5G61480		PXY, TDR	TDIF receptor, PHLOEM INTERCAL...		Lus10038930 [exp]	16.4	0.9116
AT2G21300			ATP binding microtubule motor ...		Lus10035471 [exp]	17.5	0.9070
AT2G33385		ARPC2B	actin-related protein C2B (.1....		Lus10023737 [exp]	20.9	0.8973
AT5G55950			Nucleotide/sugar transporter f...		Lus10022563 [exp]	22.3	0.9092
AT5G65760			Serine carboxypeptidase S28 fa...		Lus10039645 [exp]	22.6	0.8411
AT5G24760			GroES-like zinc-binding dehydr...		Lus10031319 [exp]	25.4	0.8713

Compare expression of checked genes

Lus10026299 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.