Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G12480 253 / 3e-83 CPK7 calmodulin-domain protein kinase 7 (.1.2) AT3G57530 251 / 2e-81 ATCPK32, CDPK32, CPK32 calcium-dependent protein kinase 32 (.1) AT2G41860 250 / 4e-81 CPK14 calcium-dependent protein kinase 14 (.1.2) AT5G19450 246 / 1e-79 CPK8, CDPK19 calcium-dependent protein kinase 19 (.1.2) AT1G74740 204 / 3e-63 CDPK1A, CPK30, ATCPK30 CALCIUM-DEPENDENT PROTEIN KINASE 1A, calcium-dependent protein kinase 30 (.1) AT1G18890 199 / 2e-61 CPK10, ATCDPK1, AtCPK10 calcium-dependent protein kinase 1 (.1) AT3G51850 192 / 5e-59 CPK13 calcium-dependent protein kinase 13 (.1) AT4G23650 175 / 3e-52 CDPK6, CPK3 Calcium dependent protein kinase 3, calcium-dependent protein kinase 6 (.1) AT4G04720 172 / 3e-51 CPK21 calcium-dependent protein kinase 21 (.1) AT5G19360 168 / 7e-50 CPK34 calcium-dependent protein kinase 34 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042370 [exp] 339 / 8e-116 AT3G57530 820 / 0.0 calcium-dependent protein kinase 32 (.1) Lus10025528 [exp] 278 / 5e-94 AT2G41860 488 / 1e-171 calcium-dependent protein kinase 14 (.1.2) Lus10026742 [exp] 272 / 7e-90 AT3G57530 793 / 0.0 calcium-dependent protein kinase 32 (.1) Lus10009947 [exp] 246 / 3e-79 AT5G19450 889 / 0.0 calcium-dependent protein kinase 19 (.1.2) Lus10027361 [exp] 244 / 1e-78 AT5G19450 909 / 0.0 calcium-dependent protein kinase 19 (.1.2) Lus10030134 [exp] 231 / 3e-74 AT5G19450 783 / 0.0 calcium-dependent protein kinase 19 (.1.2) Lus10014907 [exp] 228 / 9e-71 AT5G19450 896 / 0.0 calcium-dependent protein kinase 19 (.1.2) Lus10042185 [exp] 202 / 1e-63 AT1G74740 777 / 0.0 CALCIUM-DEPENDENT PROTEIN KINASE 1A, calcium-dependent protein kinase 30 (.1) Lus10008631 [exp] 204 / 5e-63 AT1G74740 886 / 0.0 CALCIUM-DEPENDENT PROTEIN KINASE 1A, calcium-dependent protein kinase 30 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G054600 [exp] 269 / 1e-88 AT3G57530 864 / 0.0 calcium-dependent protein kinase 32 (.1) Potri.006G052900 [exp] 261 / 2e-85 AT3G57530 863 / 0.0 calcium-dependent protein kinase 32 (.1) Potri.009G052700 [exp] 261 / 2e-85 AT5G19450 903 / 0.0 calcium-dependent protein kinase 19 (.1.2) Potri.001G257100 [exp] 256 / 1e-83 AT5G12480 903 / 0.0 calmodulin-domain protein kinase 7 (.1.2) Potri.015G066200 [exp] 214 / 6e-67 AT1G74740 918 / 0.0 CALCIUM-DEPENDENT PROTEIN KINASE 1A, calcium-dependent protein kinase 30 (.1) Potri.012G071700 [exp] 211 / 9e-66 AT1G74740 931 / 0.0 CALCIUM-DEPENDENT PROTEIN KINASE 1A, calcium-dependent protein kinase 30 (.1) Potri.006G101300 [exp] 192 / 6e-59 AT3G51850 977 / 0.0 calcium-dependent protein kinase 13 (.1) Potri.016G117200 [exp] 192 / 1e-58 AT3G51850 982 / 0.0 calcium-dependent protein kinase 13 (.1) Potri.007G127000 [exp] 190 / 6e-58 AT2G31500 744 / 0.0 calcium-dependent protein kinase 24 (.1) Potri.001G097400 [exp] 178 / 1e-53 AT4G23650 781 / 0.0 Calcium dependent protein kinase 3, calcium-dependent protein kinase 6 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0220 [flax] [poplar] EF_hand PF00036 [flax] [poplar] EF-hand_1 EF hand
Representative CDS sequence Show only first row Show all	>Lus10026300 pacid=23156475 polypeptide=Lus10026300 locus=Lus10026300.g ID=Lus10026300.BGIv1.0 annot-version=v1.0 ATGCTCAATCCCGATCCTAAGCTTCGCCTCACGGCACAACAAGTGCTTGGTGATGCAGTGAAAGCAAGACTCATACAATTCTCTGCACTGAACAAGCTCA AGAAAAGAGCTCTGAGGGTGATTGCTGAGCACTTATCGACGGAGGAAGCTAAGGGCATAAAGGAGGGATTTCAAGTGATGGATGCTGGGAACAAGGGCAA GGTTAATGAGCTTAAAATCGGTTTACAGAAACTAGGCCATAAGCTCACTGAGGATGATATTCAAATCCTCATGGAAGCTTGTGATGTTGATGGGGATGGA CATTTGGACTATGAAGAGTTTATAACCATAGCCGTCCACTTGAGAAAGATTGGAAATGATGAGCACCTCCGCAAGGCTTTTGAGTTTTTTGATCGAGACA AAAGTGGCCACATAGAAATAGAAGAGCTCAGAGAAGCTTTGGCAGGTGATCAGGTGAGTACCAACAATGAAGAAGTCATAACCATCATCATACAAGATGT TGATGCCGACAAAGATGGGAAAATAAGCTTTGAGGAGTTTGCAGCAATGATGAAAGCGGGTATGGATTGA
AA sequence Show only first row Show all	>Lus10026300 pacid=23156475 polypeptide=Lus10026300 locus=Lus10026300.g ID=Lus10026300.BGIv1.0 annot-version=v1.0 MLNPDPKLRLTAQQVLGDAVKARLIQFSALNKLKKRALRVIAEHLSTEEAKGIKEGFQVMDAGNKGKVNELKIGLQKLGHKLTEDDIQILMEACDVDGDG HLDYEEFITIAVHLRKIGNDEHLRKAFEFFDRDKSGHIEIEELREALAGDQVSTNNEEVITIIIQDVDADKDGKISFEEFAAMMKAGMD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G12480		CPK7	calmodulin-domain protein kina...		Lus10026300 [exp]	0	1
					Lus10010697 [exp]	2.2	0.9791
AT4G13230			Late embryogenesis abundant pr...		Lus10022822 [exp]	3.2	0.9791
AT5G20610			unknown protein		Lus10025003 [exp]	3.9	0.9791
					Lus10008327 [exp]	4.5	0.9791
AT2G27110	FAR1_related	FRS3	FAR1-related sequence 3 (.1.2....		Lus10008762 [exp]	5.0	0.9791
AT5G44120		ATCRA1, CRU1, C...	CRUCIFERINA, RmlC-like cupins ...		Lus10010341 [exp]	6.5	0.9367
AT3G04720		HEL, PR-4, PR4	HEVEIN-LIKE, pathogenesis-rela...		Lus10020252 [exp]	7.3	0.9220
					Lus10024618 [exp]	7.5	0.9329
AT4G12560		CPR1, CPR30	CONSTITUTIVE EXPRESSER OF PR G...		Lus10000190 [exp]	8.0	0.9292
					Lus10008920 [exp]	8.8	0.8767

Compare expression of checked genes

Lus10026300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.