Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G39670 129 / 2e-37 Calcium-binding EF-hand family protein (.1) AT3G29000 115 / 2e-32 Calcium-binding EF-hand family protein (.1) AT3G47480 82 / 1e-19 Calcium-binding EF-hand family protein (.1) AT2G43290 75 / 1e-16 MSS3 multicopy suppressors of snf4 deficiency in yeast 3, Calcium-binding EF-hand family protein (.1) AT3G59440 71 / 4e-15 Calcium-binding EF-hand family protein (.1) AT1G05990 70 / 4e-15 RHS1 ,RHS2 ROOT HAIR SPECIFIC 1, EF hand calcium-binding protein family (.1) AT4G20780 68 / 3e-14 CML42 calmodulin like 42 (.1) AT5G44460 67 / 7e-14 CML43 calmodulin like 43 (.1) AT4G03290 65 / 3e-13 EF hand calcium-binding protein family (.1) AT3G07490 63 / 1e-12 AtCML3, AGD11 calmodulin-like 3, ARF-GAP domain 11 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042369 [exp] 325 / 9e-115 AT5G39670 133 / 2e-39 Calcium-binding EF-hand family protein (.1) Lus10007536 [exp] 212 / 4e-70 AT5G39670 131 / 2e-38 Calcium-binding EF-hand family protein (.1) Lus10012199 [exp] 208 / 1e-68 AT5G39670 131 / 3e-38 Calcium-binding EF-hand family protein (.1) Lus10034463 [exp] 105 / 3e-28 AT3G29000 103 / 2e-27 Calcium-binding EF-hand family protein (.1) Lus10019090 [exp] 103 / 1e-27 AT3G29000 103 / 1e-27 Calcium-binding EF-hand family protein (.1) Lus10018012 [exp] 73 / 5e-16 AT1G18210 195 / 2e-64 Calcium-binding EF-hand family protein (.1.2) Lus10021134 [exp] 67 / 8e-14 AT4G20780 236 / 8e-80 calmodulin like 42 (.1) Lus10038088 [exp] 66 / 4e-13 AT3G07490 150 / 7e-46 calmodulin-like 3, ARF-GAP domain 11 (.1) Lus10017174 [exp] 66 / 4e-13 AT4G20780 234 / 4e-79 calmodulin like 42 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G084800 [exp] 176 / 1e-55 AT5G39670 142 / 1e-42 Calcium-binding EF-hand family protein (.1) Potri.004G122900 [exp] 154 / 3e-47 AT5G39670 141 / 3e-42 Calcium-binding EF-hand family protein (.1) Potri.008G087900 [exp] 90 / 1e-22 AT3G29000 62 / 2e-12 Calcium-binding EF-hand family protein (.1) Potri.012G048200 [exp] 68 / 3e-14 AT1G18210 188 / 8e-62 Calcium-binding EF-hand family protein (.1.2) Potri.017G029700 [exp] 67 / 1e-13 AT3G07490 192 / 1e-62 calmodulin-like 3, ARF-GAP domain 11 (.1) Potri.007G128600 [exp] 66 / 3e-13 AT2G43290 218 / 3e-72 multicopy suppressors of snf4 deficiency in yeast 3, Calcium-binding EF-hand family protein (.1) Potri.006G065900 [exp] 66 / 4e-13 AT3G07490 131 / 1e-38 calmodulin-like 3, ARF-GAP domain 11 (.1) Potri.016G142000 [exp] 66 / 4e-13 AT4G20780 197 / 3e-64 calmodulin like 42 (.1) Potri.006G112500 [exp] 65 / 5e-13 AT4G20780 238 / 2e-80 calmodulin like 42 (.1) Potri.018G127100 [exp] 64 / 2e-12 AT3G07490 132 / 6e-39 calmodulin-like 3, ARF-GAP domain 11 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0220 [flax] [poplar] EF_hand PF00036 [flax] [poplar] EF-hand_1 EF hand
Representative CDS sequence Show only first row Show all	>Lus10026301 pacid=23156617 polypeptide=Lus10026301 locus=Lus10026301.g ID=Lus10026301.BGIv1.0 annot-version=v1.0 ATGGCTTTCTTCCAATTGTACTACTTGATTACGCCTCAGTCGGAACTCTTCAGCACCAAGCAGCAATCTTCTTCTTCTTCGCTAATGATTTTATTCTTTG ACATCATCTTGTGTAAGCTTATTTTCGATCGCCTCCGGAGTTTCCCCAAAATCATCTCCAGATTTTCATTTTTCCTCCGATCTCAACTCAGACTCGGTGG TGGAGCAGAGTTATTACCATCAGAAGAGGCAGAGGTGCCGAGTACACCAACTCTGGTTTTAAGCAGAGAAGATGTGGAGGCAGTGATGGAAAAGCTGGGA TTTTTATCCAACCCAGAGGGCCAAAATCATGACCAAGCAATGGGTAGCGGTCAGATAGTGGAGTTGTTTGATGAGGAGGAGCCTAGCTTGGGGGAAGTGA AAGAAGCATTTGATGTGTTTGACGAGAACAGAGATGGGTTCATCGATGAATCTGAGTTGCAGAGAGTGATGGTTCGGCTGGGATTGAAGGAAGGATTTGA GATTGATGGATGCTGCAAGATGATCAGAACTTTTGATGAGAATGGCGATGGGAGGATAGATTTCTGTGAATTTCTGAAGTTCATGGAGAATAGTTTTTGT TGA
AA sequence Show only first row Show all	>Lus10026301 pacid=23156617 polypeptide=Lus10026301 locus=Lus10026301.g ID=Lus10026301.BGIv1.0 annot-version=v1.0 MAFFQLYYLITPQSELFSTKQQSSSSSLMILFFDIILCKLIFDRLRSFPKIISRFSFFLRSQLRLGGGAELLPSEEAEVPSTPTLVLSREDVEAVMEKLG FLSNPEGQNHDQAMGSGQIVELFDEEEPSLGEVKEAFDVFDENRDGFIDESELQRVMVRLGLKEGFEIDGCCKMIRTFDENGDGRIDFCEFLKFMENSFC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G39670			Calcium-binding EF-hand family...		Lus10026301 [exp]	0	1
AT5G43980		PDLP1, PDLP1A	PLASMODESMATA-LOCATED PROTEIN ...		Lus10001418 [exp]	2.0	0.8870
AT5G17680			disease resistance protein (TI...		Lus10010221 [exp]	2.6	0.9032
					Lus10034871 [exp]	2.8	0.8749
AT4G27280			Calcium-binding EF-hand family...		Lus10018511 [exp]	4.2	0.8782
AT1G02550			Plant invertase/pectin methyle...		Lus10039849 [exp]	9.5	0.8623
AT1G21550			Calcium-binding EF-hand family...		Lus10042761 [exp]	11.2	0.7845
AT5G22380	NAC	ANAC090	NAC domain containing protein ...		Lus10004846 [exp]	13.9	0.8562
AT5G03250			Phototropic-responsive NPH3 fa...		Lus10013799 [exp]	14.3	0.8730
AT3G50930		BCS1	cytochrome BC1 synthesis (.1)		Lus10028463 [exp]	14.3	0.8320
AT2G01520		ZCE1, MLP328	\(Zusammen-CA\)-enhanced 1, ML...		Lus10028887 [exp]	20.5	0.8447

Compare expression of checked genes

Lus10026301 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.