Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G57540 152 / 2e-45 Remorin family protein (.1) AT2G41870 147 / 2e-43 Remorin family protein (.1) AT3G48940 52 / 2e-08 Remorin family protein (.1) AT5G23750 52 / 3e-08 Remorin family protein (.1.2) AT1G67590 50 / 2e-07 Remorin family protein (.1.2) AT3G61260 47 / 1e-06 Remorin family protein (.1) AT4G00670 43 / 2e-05 Remorin family protein (.1) AT1G30320 42 / 0.0002 Remorin family protein (.1) AT2G02170 42 / 0.0002 Remorin family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042367 [exp] 181 / 7e-58 AT3G57540 153 / 5e-46 Remorin family protein (.1) Lus10008014 [exp] 58 / 1e-10 AT5G23750 158 / 5e-50 Remorin family protein (.1.2) Lus10014785 [exp] 55 / 3e-09 AT3G61260 177 / 1e-56 Remorin family protein (.1) Lus10018840 [exp] 53 / 1e-08 AT3G61260 206 / 1e-67 Remorin family protein (.1) Lus10017811 [exp] 53 / 2e-08 AT3G61260 199 / 5e-65 Remorin family protein (.1) Lus10001477 [exp] 53 / 2e-08 AT5G23750 162 / 3e-50 Remorin family protein (.1.2) Lus10008477 [exp] 49 / 5e-07 AT5G23750 154 / 5e-47 Remorin family protein (.1.2) Lus10039215 [exp] 49 / 7e-07 AT3G61260 196 / 7e-64 Remorin family protein (.1) Lus10027460 [exp] 47 / 2e-06 AT3G61260 192 / 2e-62 Remorin family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G054400 [exp] 182 / 3e-57 AT2G41870 206 / 7e-66 Remorin family protein (.1) Potri.006G053200 [exp] 175 / 2e-54 AT3G57540 196 / 2e-61 Remorin family protein (.1) Potri.014G058900 [exp] 54 / 2e-08 AT2G41870 64 / 2e-11 Remorin family protein (.1) Potri.008G178300 [exp] 52 / 5e-08 AT1G67590 306 / 1e-102 Remorin family protein (.1.2) Potri.010G056800 [exp] 50 / 4e-07 AT1G67590 253 / 8e-82 Remorin family protein (.1.2) Potri.002G157700 [exp] 49 / 5e-07 AT3G61260 167 / 2e-52 Remorin family protein (.1) Potri.015G143600 [exp] 49 / 5e-07 AT5G23750 111 / 1e-30 Remorin family protein (.1.2) Potri.014G081300 [exp] 47 / 1e-06 AT3G61260 199 / 4e-65 Remorin family protein (.1) Potri.014G027900 [exp] 44 / 5e-05 AT1G45207 442 / 1e-149 Remorin family protein (.2) Potri.003G124400 [exp] 43 / 5e-05 AT5G23750 129 / 6e-38 Remorin family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03763 [flax] [poplar] Remorin_C Remorin, C-terminal region
Representative CDS sequence Show only first row Show all	>Lus10026302 pacid=23156443 polypeptide=Lus10026302 locus=Lus10026302.g ID=Lus10026302.BGIv1.0 annot-version=v1.0 ATGAGCAGAGAATTCAACGCCCTCGTCATCGCCGGCTCCACCGCTGGGGCCCCCACCGGAAGTACAAGCTCCGGCGGGGGAGAAGTTGGAGACAACAACA GCAGCGACAACAATAACAATAATAATAGCAACAACAACTACTACTTGACGAGGATCGGAGAGGACGATCAGGTGGGGTTCGAGACGAATCCATTAGCTAT CGTGCCGGATAATAATCCACTGATGAGGCTGGGAAGGGAAGCTGCACCGTCTACGACGACGGCGTCGTCGTCGGAGCAGCAGCGGGTGGAAGAAGTGATG ACGGTGGGGAGGGTGAAAATGGAAGAAGTGGAGAGCAAGATAAGTGCATGGGAGAACGAGGAGATTGCAAAGGTTAATAACAGGTTGAAAAGAGACGAAG CTATCATTAATGGCTGGGAGAATGACAAGGTTCAGAACGCCACTGCTTGGATGAAGAAGATCGAGAGGAAGCTGGAAGAGAAGAGAGCAAGAGCAGCAGA GAAGATGCAGAACAAGGTAGCCAAAGCACACAGGAAAGCTGAGGAGAAGAGAGCATCTGCTGAGGCCAAGAGAGGTACTAAAGTTGCTCGAATTCTTGAG CTTTCCAATCTCATGAGAGCTGTTGGTAAACCACCCACCAAAAGATCCTTCTGGTGA
AA sequence Show only first row Show all	>Lus10026302 pacid=23156443 polypeptide=Lus10026302 locus=Lus10026302.g ID=Lus10026302.BGIv1.0 annot-version=v1.0 MSREFNALVIAGSTAGAPTGSTSSGGGEVGDNNSSDNNNNNNSNNNYYLTRIGEDDQVGFETNPLAIVPDNNPLMRLGREAAPSTTTASSSEQQRVEEVM TVGRVKMEEVESKISAWENEEIAKVNNRLKRDEAIINGWENDKVQNATAWMKKIERKLEEKRARAAEKMQNKVAKAHRKAEEKRASAEAKRGTKVARILE LSNLMRAVGKPPTKRSFW

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G57540			Remorin family protein (.1)		Lus10026302 [exp]	0	1
AT3G57540			Remorin family protein (.1)		Lus10042367 [exp]	1.0	0.9458
AT2G34200			RING/FYVE/PHD zinc finger supe...		Lus10007293 [exp]	1.4	0.9268
AT5G13170		SAG29, SWEET15,...	senescence-associated gene 29 ...		Lus10011335 [exp]	2.4	0.8731
AT1G03495			HXXXD-type acyl-transferase fa...		Lus10033754 [exp]	3.0	0.8983
AT1G50660			unknown protein		Lus10002069 [exp]	4.2	0.8315
AT5G12300			Calcium-dependent lipid-bindin...		Lus10001346 [exp]	4.9	0.8872
AT3G11690			unknown protein		Lus10013608 [exp]	6.2	0.8264
AT4G31940		CYP82C4	"cytochrome P450, family 82, s...		Lus10025904 [exp]	6.9	0.8652
AT4G29110			unknown protein		Lus10014153 [exp]	7.1	0.8784
AT3G27250			unknown protein		Lus10014610 [exp]	7.6	0.8130

Compare expression of checked genes

Lus10026302 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.