Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G51340 544 / 0 MATE efflux family protein (.1.2) AT3G08040 501 / 4e-174 ATFRD3, MAN1, FRD3 MANGANESE ACCUMULATOR 1, FERRIC REDUCTASE DEFECTIVE 3, MATE efflux family protein (.1.2) AT2G38330 338 / 2e-110 MATE efflux family protein (.1) AT4G38380 338 / 5e-110 MATE efflux family protein (.1) AT2G21340 52 / 1e-06 MATE efflux family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042365 [exp] 941 / 0 AT1G51340 571 / 0.0 MATE efflux family protein (.1.2) Lus10039609 [exp] 535 / 0 AT3G08040 619 / 0.0 MANGANESE ACCUMULATOR 1, FERRIC REDUCTASE DEFECTIVE 3, MATE efflux family protein (.1.2) Lus10029517 [exp] 520 / 6e-180 AT3G08040 596 / 0.0 MANGANESE ACCUMULATOR 1, FERRIC REDUCTASE DEFECTIVE 3, MATE efflux family protein (.1.2) Lus10016412 [exp] 503 / 2e-174 AT1G51340 569 / 0.0 MATE efflux family protein (.1.2) Lus10027367 [exp] 484 / 8e-166 AT1G51340 664 / 0.0 MATE efflux family protein (.1.2) Lus10012227 [exp] 339 / 4e-110 AT2G38330 608 / 0.0 MATE efflux family protein (.1) Lus10023943 [exp] 324 / 2e-104 AT4G38380 593 / 0.0 MATE efflux family protein (.1) Lus10026829 [exp] 288 / 1e-90 AT4G38380 535 / 0.0 MATE efflux family protein (.1) Lus10014441 [exp] 280 / 3e-84 AT4G38380 501 / 2e-167 MATE efflux family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G053600 [exp] 637 / 0 AT1G51340 543 / 0.0 MATE efflux family protein (.1.2) Potri.009G053700 [exp] 567 / 0 AT1G51340 634 / 0.0 MATE efflux family protein (.1.2) Potri.009G061100 [exp] 548 / 0 AT3G08040 566 / 0.0 MANGANESE ACCUMULATOR 1, FERRIC REDUCTASE DEFECTIVE 3, MATE efflux family protein (.1.2) Potri.001G266900 [exp] 540 / 0 AT3G08040 598 / 0.0 MANGANESE ACCUMULATOR 1, FERRIC REDUCTASE DEFECTIVE 3, MATE efflux family protein (.1.2) Potri.016G126000 [exp] 344 / 2e-112 AT2G38330 499 / 9e-173 MATE efflux family protein (.1) Potri.009G143400 [exp] 344 / 5e-112 AT4G38380 626 / 0.0 MATE efflux family protein (.1) Potri.004G183600 [exp] 343 / 7e-112 AT4G38380 604 / 0.0 MATE efflux family protein (.1) Potri.005G102800 [exp] 323 / 3e-104 AT4G38380 547 / 0.0 MATE efflux family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0222 [flax] [poplar] MviN_MATE PF01554 [flax] [poplar] MatE MatE
Representative CDS sequence Show only first row Show all	>Lus10026303 pacid=23156596 polypeptide=Lus10026303 locus=Lus10026303.g ID=Lus10026303.BGIv1.0 annot-version=v1.0 ATGGGGGGTTCGTTTTGGAGAAGCATCATGCCGCCTTTTGTATTCTTCCACAACGCTAGAAGCATCTTCTCGAAAGATTATCTGTGCTTGGAACTCATGG AAATTGCAATTCCTGCTGCACTTGCTTTGGCAGCAGATCCCATTGCTTCCCTTATTGACACGGTTTTCATTGGCCATCTAGGTCCCATTGAGCTTGCAGC AGTTGGAGTTTCTATTGCTGTGTTTAATCAAGTATCAAAGATTGCAATCTTCCCAATTGTTAGTGTTACCACTTCTCTGGTTGCCCAAGAAGATACCATT GCAACATTATTTCCTGAAGATCAGGCAACAGAACTGCTAGATACCTCTTCTAATAACAAAGAAACAGACTCGTTGTTACACAAAGTACCTGATCCGACAG TAACACCTGAATCCCAAGCCACTAACCGTAGCTTCAAAAAGGGAGCCTTTGAGAAACGATACATCCCATCAGCTGCTTCAGCGATGGTCGTTGGTTGTAT ACTTGGTTTGGTCCAAACTTGCAGTCTCATTTTGGCTGCTGAACCTATCCTTGAATACATGGGTGTGCACAAGGATTCTCCCATGTTAATACCTGCACAA AAATACTTAACCTTGAGGTCACTTGGGGCTCCTGCGGTTCTTCTGTCTTTGGCTATGCAAGGGGTTTTCCGGGGAATCAAGAACACAAGAACTCCTCTTT TTGCTACAGTTCTTGGAGATGTTGCAAATATTATCCTAGATCCTATATTCATATTTGTATTCAAACTGAATGTCAGTGGTGCTGCCATTGCCCATGTTAT TTCTCAGTACTTGATTTCCATAGTCCTTATGTGGCAATTAGTTCATGAAGTTGATGTATTGGCGCCAAGCATCTGGGACCTGCAACTCGGCCGCTTTCTC AAAAGTGGATTCATGTTGCTCATGAGAGTGATAGCTGCAACATTCTGTATTACCCTGGCAGCGTCTTTGGCTGCTAGGGATGGACCAACATCAATGGCCG CATTTCAGGTTTGCTTGCAGATCTGGTTGGCGACCTCTTTGCTTGCTGATGGCCTCGCAGTGTCTGGACAGGCAATCCTTGCAGGTGCATTTGCGAAGAA CGACTTCGACATGGCTGAGGATATTGGTTGTCGTGTGTTGCAGTATGCTTTTTTTCTAGGTGTGGCACTGGCTATTGTTCTCTATCCAGGGTTGCTGTAT GGTGCAGGATTATTTACGGAAGACAATGATGTCTTGAAACTCATTGGTCTAGGTGTCCCGTTTGTTGCGGCAACTCAACCCATCAACGTTTTGGCCTTCG TCTTCGATGGAGTCAACTACGGAGCATCTGATTTTGCATATTCTTCATACTCAATGATCATTGTGGCAATAATTAGTTTAATTAGTCTCTATAAATTAGC TTTGAGCCACGGGTTTATCGGTATCTGGGTTGCTTTAACCCTCTTCATGACCTTGCGTTGCTTCGCCGGGTTTCTAAGGATAGGATTCGGGCTAGGACCT TGGAGCTTCCGGAGGAGGATGAATATATGA
AA sequence Show only first row Show all	>Lus10026303 pacid=23156596 polypeptide=Lus10026303 locus=Lus10026303.g ID=Lus10026303.BGIv1.0 annot-version=v1.0 MGGSFWRSIMPPFVFFHNARSIFSKDYLCLELMEIAIPAALALAADPIASLIDTVFIGHLGPIELAAVGVSIAVFNQVSKIAIFPIVSVTTSLVAQEDTI ATLFPEDQATELLDTSSNNKETDSLLHKVPDPTVTPESQATNRSFKKGAFEKRYIPSAASAMVVGCILGLVQTCSLILAAEPILEYMGVHKDSPMLIPAQ KYLTLRSLGAPAVLLSLAMQGVFRGIKNTRTPLFATVLGDVANIILDPIFIFVFKLNVSGAAIAHVISQYLISIVLMWQLVHEVDVLAPSIWDLQLGRFL KSGFMLLMRVIAATFCITLAASLAARDGPTSMAAFQVCLQIWLATSLLADGLAVSGQAILAGAFAKNDFDMAEDIGCRVLQYAFFLGVALAIVLYPGLLY GAGLFTEDNDVLKLIGLGVPFVAATQPINVLAFVFDGVNYGASDFAYSSYSMIIVAIISLISLYKLALSHGFIGIWVALTLFMTLRCFAGFLRIGFGLGP WSFRRRMNI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G51340			MATE efflux family protein (.1...		Lus10026303 [exp]	0	1
AT1G75130		CYP721A1	"cytochrome P450, family 721, ...		Lus10016310 [exp]	1.7	0.9687
AT1G76690		OPR2, ATOPR2	ARABIDOPSIS 12-OXOPHYTODIENOAT...		Lus10009473 [exp]	2.8	0.9582
AT2G29420		GST25, ATGSTU7	GLUTATHIONE S-TRANSFERASE 25, ...		Lus10016471 [exp]	3.5	0.9558
AT1G11655			unknown protein		Lus10002065 [exp]	3.7	0.9360
AT4G15550		IAGLU	indole-3-acetate beta-D-glucos...		Lus10019989 [exp]	4.0	0.9534
AT2G01570	GRAS	RGA1	REPRESSOR OF GA1-3 1, REPRESSO...		Lus10018100 [exp]	4.4	0.9190
AT5G50760			SAUR-like auxin-responsive pro...		Lus10003140 [exp]	5.5	0.9479
AT2G29420		GST25, ATGSTU7	GLUTATHIONE S-TRANSFERASE 25, ...		Lus10016467 [exp]	6.5	0.9407
AT2G20030			RING/U-box superfamily protein...		Lus10012975 [exp]	6.7	0.9283
AT5G57190		PSD2	phosphatidylserine decarboxyla...		Lus10010761 [exp]	7.3	0.9337

Compare expression of checked genes

Lus10026303 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.