Plant FIBer expression Database

Lus10026304 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G57570 127 / 7e-34 ARM repeat superfamily protein (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10042364
[exp]
332 / 5e-107 AT3G57570 842 / 0.0 ARM repeat superfamily protein (.1.2)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.006G054100
[exp]
157 / 6e-44 AT3G57570 967 / 0.0 ARM repeat superfamily protein (.1.2)
PFAM info
Representative CDS sequence
>Lus10026304 pacid=23156585 polypeptide=Lus10026304 locus=Lus10026304.g ID=Lus10026304.BGIv1.0 annot-version=v1.0
ATGGAGGGAGAGGAAGAAAACCAGCTGATATGGAGGTCGGAGTTGCTACTGGAATCCAATGTCTCAGTTACGCTTGGAAGAGCAATGTCTTCTCTGCTTG
GTGCTCGTCCCAAGAAGCTTCGAGCCTCCTTATCATCCGGCCTTACTCCATATTCTTCTTCGAAAAGGCCTTTATACGGTACCAGGAATTTGATTTTCGA
ATTTGGAGTTTCTACAATTTCGCAAATCCTGGATTTCAACCTCTCCGGTTCTGTTGATGTAGGTTCATTGGAGGAACAACTCTTGTTTCTTCAGAAGTAT
GTCGAAGATGCAGCGGGAAGGAATGAGAAACTGGACGACATTCTTATCCCCATCATTCAGAACTCACTCGAGAACAAAGGGTTGCGGCGTGGTGGTCAAG
CTTTGCTACTTGTGAACTGGCTATTTCAAGATGCTTCTGTATTCCGAGCTGTTTCCATGAATCCCGCGGACATTATCAAGACGAAAGACGATCGTTTCAT
TTCTCTTGGCTGGTGCATACTTGTTCGCAATCTTGTGGAGTATGAGAATTTTATGGATAAGTATTCGTTGTATGGTAAATCGCCAGATACCTTGTTCACC
TTCTGCCTCCCAAGAAGTTGTAAATTGTTTTCGTCCAGTTCATTTGTGTGA
AA sequence
>Lus10026304 pacid=23156585 polypeptide=Lus10026304 locus=Lus10026304.g ID=Lus10026304.BGIv1.0 annot-version=v1.0
MEGEEENQLIWRSELLLESNVSVTLGRAMSSLLGARPKKLRASLSSGLTPYSSSKRPLYGTRNLIFEFGVSTISQILDFNLSGSVDVGSLEEQLLFLQKY
VEDAAGRNEKLDDILIPIIQNSLENKGLRRGGQALLLVNWLFQDASVFRAVSMNPADIIKTKDDRFISLGWCILVRNLVEYENFMDKYSLYGKSPDTLFT
FCLPRSCKLFSSSSFV

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT3G57570 ARM repeat superfamily protein... Lus10026304
[exp]
0 1
AT2G46990 AUX_IAA IAA20 indole-3-acetic acid inducible... Lus10010081
[exp]
8.5 0.6691
AT5G14070 ROXY2 Thioredoxin superfamily protei... Lus10038514
[exp]
30.5 0.6516
AT3G50390 Transducin/WD40 repeat-like su... Lus10009510
[exp]
38.1 0.6026
AT2G38360 PRA1.B4 prenylated RAB acceptor 1.B4 (... Lus10042099
[exp]
38.7 0.5805
AT1G49430 LRD2, LACS2 LATERAL ROOT DEVELOPMENT 2, lo... Lus10023832
[exp]
39.5 0.6266
AT4G31820 MAB4, ENP, NPY1 NAKED PINS IN YUC MUTANTS 1, M... Lus10042414
[exp]
60.6 0.6246
AT1G77610 EamA-like transporter family p... Lus10018189
[exp]
75.6 0.6047
Lus10041470
[exp]
81.8 0.5861
AT1G68780 RNI-like superfamily protein (... Lus10038948
[exp]
87.1 0.5995
AT4G36740 HD HB-5, ATHB40 homeobox protein 40 (.1) Lus10024031
[exp]
88.1 0.6029

Lus10026304 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.