Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G57570 216 / 4e-61 ARM repeat superfamily protein (.1.2) AT3G52105 74 / 2e-16 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042364 [exp] 467 / 7e-154 AT3G57570 842 / 0.0 ARM repeat superfamily protein (.1.2) Lus10042363 [exp] 128 / 5e-36 AT3G52105 75 / 6e-20 unknown protein Lus10012208 [exp] 99 / 3e-25 AT3G52105 70 / 5e-18 unknown protein Lus10011321 [exp] 97 / 1e-24 AT3G52105 72 / 1e-18 unknown protein Lus10029521 [exp] 81 / 6e-19 AT3G52105 85 / 8e-24 unknown protein Lus10016415 [exp] 75 / 1e-16 AT3G52105 81 / 3e-22 unknown protein Lus10019704 [exp] 74 / 2e-16 AT3G52105 80 / 6e-22 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G054100 [exp] 264 / 6e-78 AT3G57570 967 / 0.0 ARM repeat superfamily protein (.1.2) Potri.016G053400 [exp] 96 / 9e-24 AT3G52105 76 / 9e-20 unknown protein Potri.006G054200 [exp] 84 / 6e-20 AT3G52105 67 / 2e-16 unknown protein Potri.001G267501 [exp] 82 / 2e-19 AT3G52105 87 / 9e-25 unknown protein Potri.009G061800 [exp] 80 / 2e-18 AT3G52105 90 / 1e-25 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10026305 pacid=23156396 polypeptide=Lus10026305 locus=Lus10026305.g ID=Lus10026305.BGIv1.0 annot-version=v1.0 ATGGAGGAAATTTTTATTTCTGCACAAACTTATTCATCCTTTTCCTTTGGGAGTGAAAAGCTTCACTGCACAGATGAAGATGTGGTAACTGGAGCTGTTT GCTTACTGAAGGCATCCATTTTCTACAATGGCACTTCATCTGCACGCATTTCTGACAATACGCAAATGAATATACTGTTACCAGAGTTACTGAAACTTCT TGATGAACGTGATACCACAGCTAGAGCCGTTGTTATGCTCATAGCTGAGTACTGCTCCATGAGCACTGGAAATCATTGTCTTGGACAGATTCTCCAGCGT CTTGATTCGGAAGATACTAAGCAGAGGAGAAATGCCATTGATGTCATATCAGAAGTGATAAACGCAGATAACCTTCCTTATGTGGCAAGGCAAGACATTG CCAACAACTTGCTGAATCACCTTGTTGATGAAGAAACTATAATACGTGATCAAGCATCCAATTTGCTTGCCAAAATAGATCCATCTCTTTTCTTGCCAGC ATTAGTTGCCCTCCTCTACTCACCAGATGATAGGGTGAGAATATCAGCTGCCAGCAATTTTGTAGATGTGTTCAATTATCATGGCCAGAAACCTGATCTT ATATGCATGCTACTGGATTGCCTTAGGTATAATTCTTATATTTACTCCTGCAGCTATTCAAAGAGGGAAAGTGATCCAGTAGCTGAGCTAATACCAGAGT GGTCTAAAACTGTCCAAGACTGGAAACCACTTGTTGCAGTGTTAATTGACAAGTTGTTTTCAGAGCCTGCAAATGCAACTATTGTCCGGTTCATGAGCTG TATAAGCGACCACTTGGCAGAAGTTGCTGATTTGGTCCTTAATCATGTCTTATTGCAAATGAAAGGACAAGAGTTACCGACAACGCAGGGAACAATTGGG CAAGCAGACATCAGAGCAGCTTGTGTGCAGGTTCTTTTCCAAGCTGTGTACCATCTCAAGTCTGCAGTGCTTCCATTTTCGCTTGATCTGCTTAAACTAT CTTTGGAACTGCTTCCAGATGGATCAGAAAAGGAAATATTGGGAGGCGCAAAATTAATGGCGTCGTTGATGGGGAGTGAAGAGGAAGTAGTGGATAGGAT ATCAGGAGGTTTAGTGGAAGCAAGGTCGGTTTTGTTACAAGTTTGTAAGTCAGATCCTTCCCCTGAAATGCGACAGATATGCAGCCAGCTTCTTACTTGC ATCACTCCTGCGCCGAAGCTCTCCTCTCATCCATATTACATATCCGTTCTTCATAGCTTCTTCGGCAGGGAGGGTGGACACAGAGGAAATCAATTGAAGA ATATGTTGCAAATTTTCTTTGCGGTGGCTTTCTCATCGGTGCCGTTGACGCTGTACATACCTCCGATTCGTTCCCTAAACCTGTTCGTGGAGACAATGGA GGATTTGCTCCGTCAAATAGCCATCCAAACGCTAAGGACTTATCCTCGCCTACAGGTCGCCTTCTCTGGACTCATCACCAATCTCGTCTCGTCCCGGTAA
AA sequence Show only first row Show all	>Lus10026305 pacid=23156396 polypeptide=Lus10026305 locus=Lus10026305.g ID=Lus10026305.BGIv1.0 annot-version=v1.0 MEEIFISAQTYSSFSFGSEKLHCTDEDVVTGAVCLLKASIFYNGTSSARISDNTQMNILLPELLKLLDERDTTARAVVMLIAEYCSMSTGNHCLGQILQR LDSEDTKQRRNAIDVISEVINADNLPYVARQDIANNLLNHLVDEETIIRDQASNLLAKIDPSLFLPALVALLYSPDDRVRISAASNFVDVFNYHGQKPDL ICMLLDCLRYNSYIYSCSYSKRESDPVAELIPEWSKTVQDWKPLVAVLIDKLFSEPANATIVRFMSCISDHLAEVADLVLNHVLLQMKGQELPTTQGTIG QADIRAACVQVLFQAVYHLKSAVLPFSLDLLKLSLELLPDGSEKEILGGAKLMASLMGSEEEVVDRISGGLVEARSVLLQVCKSDPSPEMRQICSQLLTC ITPAPKLSSHPYYISVLHSFFGREGGHRGNQLKNMLQIFFAVAFSSVPLTLYIPPIRSLNLFVETMEDLLRQIAIQTLRTYPRLQVAFSGLITNLVSSR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G57570			ARM repeat superfamily protein...		Lus10026305 [exp]	0	1
AT1G16590		REV7, ATREV7	DNA-binding HORMA family prote...		Lus10037584 [exp]	3.7	0.6625
AT4G20310			Peptidase M50 family protein (...		Lus10038402 [exp]	5.3	0.6301
AT2G30480			unknown protein		Lus10034450 [exp]	8.7	0.6616
					Lus10000458 [exp]	8.8	0.6877
AT5G61980		AGD1	ARF-GAP domain 1 (.1)		Lus10016724 [exp]	10.8	0.6994
AT5G20320		DCL4, ATDCL4	dicer-like 4 (.1.2)		Lus10040013 [exp]	19.7	0.6881
AT5G08680			ATP synthase alpha/beta family...		Lus10024114 [exp]	23.0	0.6644
					Lus10022719 [exp]	37.1	0.6734
AT5G24810			ABC1 family protein (.1.2)		Lus10026971 [exp]	40.5	0.6659
AT1G01580		FRD1, ATFRO2, F...	FERRIC CHELATE REDUCTASE DEFEC...		Lus10027507 [exp]	41.7	0.6752

Compare expression of checked genes

Lus10026305 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.