Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G02420 523 / 0 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G71060 177 / 2e-50 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G61360 176 / 7e-50 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G15010 176 / 2e-49 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G77360 168 / 8e-47 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G20300 155 / 6e-42 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G11310 155 / 1e-41 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G49730 153 / 7e-41 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G74900 150 / 8e-41 OTP43 organelle transcript processing defect 43, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G52640 151 / 1e-40 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042362 [exp] 822 / 0 AT1G02420 613 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10001784 [exp] 189 / 1e-54 AT3G61360 490 / 2e-170 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10001633 [exp] 174 / 5e-49 AT1G71060 602 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10001588 [exp] 171 / 3e-47 AT1G77360 679 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10021991 [exp] 170 / 6e-47 AT5G15010 617 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10039021 [exp] 166 / 9e-46 AT3G49730 215 / 5e-62 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10030603 [exp] 160 / 7e-44 AT1G52640 672 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10042307 [exp] 155 / 7e-42 AT1G74900 549 / 0.0 organelle transcript processing defect 43, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10015827 [exp] 150 / 2e-40 AT3G04130 535 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G079400 [exp] 619 / 0 AT1G02420 649 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.001G130400 [exp] 184 / 8e-53 AT3G61360 540 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G181900 [exp] 182 / 2e-52 AT1G77360 723 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.010G114700 [exp] 172 / 2e-48 AT1G71060 679 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.015G070200 [exp] 160 / 4e-44 AT1G74900 590 / 0.0 organelle transcript processing defect 43, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G245400 [exp] 160 / 6e-44 AT1G20300 768 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G066700 [exp] 160 / 1e-43 AT1G20300 213 / 5e-62 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.016G025600 [exp] 159 / 7e-43 AT3G22470 426 / 3e-141 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.004G102700 [exp] 156 / 2e-42 AT1G52640 697 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.013G053600 [exp] 155 / 1e-41 AT5G15010 659 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10026306 pacid=23156547 polypeptide=Lus10026306 locus=Lus10026306.g ID=Lus10026306.BGIv1.0 annot-version=v1.0 ATGCTCTACATTCTCGGCAGGAGCCGCAAATTCGACCAAATCTGGGATGTCCTCGTCGACATGAAGAGGAAAGACGCCAACTTGATATCCCCAAGAACTG TGCAAGTGGTTTTGGGTAGGATTGCTAAGCTCTGCTCCGTTAGGATGACGGTTGAGTCCTTTCGCAAGTTCAAGAAGCTTGTTCCTGAGTTTGACACCTC TTGTTTTAATGCCCTCTTGAGAACTCTGTGTCAGGAGAAGAGCATGGTTGATGCTAGAAACGTGTACAACGCTTTGAAAGGGGAGTTCAGGCCGAATTTG TACACTTTCAACGTACTTCTCTCCGGATGGAAGTCTGTAGAGGAAGCTGAATTATTCTTCCGGGAGATGAAGGAATTCGGCATGGCTCCGGATGTGGTTT CATATAATTCGTTGATCGACGTGTACTGTAAAGGAGGAGAATTGAAGAAAGCCTATGAGATGGTTGAAAAGATGAGAGATGAAGATATATCGCCTGATGT GATAACTTATACCAGCGTCATTGGAGGCTTAGGGTTGGCTGGTCAGCCGGATAAAGCCAGATATGGGCTTAAGGAAATGAAGGAATATGGATGTTACCCG GATGTAGCAGCGTATAATGCTGTTATCCGGAACTATTGTATCGCGAAACGGCTTCCTGATGCGTTTGCTTTGGTGGATGAGATGCAAGCGAAGGGGTTGC ATCCAAATTCGGCGACCTATAATTTGTTCTTTCGTGTGTTTTATTGGTCTAACGACCTGCGTAGTTCGTGGAGCTTGTACGAGAAGATGATGGAGGATGA TACTTGTTGTTGCCTTCCGAATACTCAGTCGTGTATGTTTCTAATCAAGCTGTGTAGGAGGCATGAGAGAGTGGATATGGCGTTCAAGCTTTGGGATGAT ATGGTGGATAAGAGTTTCGGGTCTTACACTTTGGTATCCGATGTGTTGTTTGACTTGCTATGTGATGCTGGGAAGTTGTTGGAAGCTGAGAAATGTTTCT TGCAGATGGTAAAGATGGGACAAAAGCCGAGTTCTGTCTCTTTTAGGAGGATCAGGGTGCTTATGGAATTAGCAAACAATCACGATGGTGTCCAGAACTT GTCAGAGAAGATGGCGATTTTCGATTCTTCAATTCGAGTTCCTCAAACAGCTGAGAGAAGGGCAGGTAGTTTGCAAGTCAATCCGGGAGCATTTGAACAC CGAGTGAAAGGAGACCGTCAATGGACTGGTGAAGCATACTTGGAGAACGCTTAA
AA sequence Show only first row Show all	>Lus10026306 pacid=23156547 polypeptide=Lus10026306 locus=Lus10026306.g ID=Lus10026306.BGIv1.0 annot-version=v1.0 MLYILGRSRKFDQIWDVLVDMKRKDANLISPRTVQVVLGRIAKLCSVRMTVESFRKFKKLVPEFDTSCFNALLRTLCQEKSMVDARNVYNALKGEFRPNL YTFNVLLSGWKSVEEAELFFREMKEFGMAPDVVSYNSLIDVYCKGGELKKAYEMVEKMRDEDISPDVITYTSVIGGLGLAGQPDKARYGLKEMKEYGCYP DVAAYNAVIRNYCIAKRLPDAFALVDEMQAKGLHPNSATYNLFFRVFYWSNDLRSSWSLYEKMMEDDTCCCLPNTQSCMFLIKLCRRHERVDMAFKLWDD MVDKSFGSYTLVSDVLFDLLCDAGKLLEAEKCFLQMVKMGQKPSSVSFRRIRVLMELANNHDGVQNLSEKMAIFDSSIRVPQTAERRAGSLQVNPGAFEH RVKGDRQWTGEAYLENA

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G02420			Pentatricopeptide repeat (PPR)...		Lus10026306 [exp]	0	1
AT2G40860			protein kinase family protein ...		Lus10024475 [exp]	7.9	0.6940
AT5G04670			Enhancer of polycomb-like tran...		Lus10008985 [exp]	11.2	0.7735
AT2G20330			Transducin/WD40 repeat-like su...		Lus10022855 [exp]	27.5	0.6697
AT5G50990			Tetratricopeptide repeat (TPR)...		Lus10032531 [exp]	32.0	0.6483
AT5G43820			Pentatricopeptide repeat (PPR)...		Lus10010662 [exp]	56.1	0.6670
AT3G51650			unknown protein		Lus10009100 [exp]	73.9	0.6542
AT4G10925			Nuclear transport factor 2 (NT...		Lus10023064 [exp]	82.7	0.6476
AT3G13224			RNA-binding (RRM/RBD/RNP motif...		Lus10032595 [exp]	83.5	0.6241
AT5G47940			unknown protein		Lus10019713 [exp]	96.5	0.6094
AT5G25530			DNAJ heat shock family protein...		Lus10008109 [exp]	101.7	0.6086

Compare expression of checked genes

Lus10026306 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.