Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10026307 pacid=23156426 polypeptide=Lus10026307 locus=Lus10026307.g ID=Lus10026307.BGIv1.0 annot-version=v1.0 ATGCTGAAGCTGGTAGGCGATAGAAAGTGGGCCGGAAAGTGGAAATACATGGGCTACGGTCAACCATTGTCTGGGCCGAGAAGTGGAAATCTATTGCCCA TGGGTTCAGGATCTGAGCTCTTGAAATGGGATACGCACTCTTACACCGTCGACTACAAAGTTTCCATGGCTGGGGTTCCTGGGTTAAGCCATGATGTGTT GATATTGATGATGTATGAACAAGCAGACCCTTAA
AA sequence Show only first row Show all	>Lus10026307 pacid=23156426 polypeptide=Lus10026307 locus=Lus10026307.g ID=Lus10026307.BGIv1.0 annot-version=v1.0 MLKLVGDRKWAGKWKYMGYGQPLSGPRSGNLLPMGSGSELLKWDTHSYTVDYKVSMAGVPGLSHDVLILMMYEQADP

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10026307 [exp]	0	1
AT5G14850			Alg9-like mannosyltransferase ...		Lus10034759 [exp]	10.7	0.7297
AT2G24960			unknown protein		Lus10026250 [exp]	10.8	0.7737
AT3G23910			unknown protein		Lus10016653 [exp]	16.0	0.6591
AT1G04945			HIT-type Zinc finger family pr...		Lus10008703 [exp]	16.2	0.7143
					Lus10033536 [exp]	31.1	0.6891
AT4G31580		SRZ22, RSZP22, ...	RS-containing zinc finger prot...		Lus10020123 [exp]	36.3	0.7031
AT2G21710		EMB2219	embryo defective 2219, Mitocho...		Lus10026342 [exp]	43.2	0.6820
AT2G19560		ESSP1, AtTHP1, ...	ectopic expression of seed sto...		Lus10032680 [exp]	47.8	0.6802
					Lus10024697 [exp]	54.1	0.6946
AT5G17440			LUC7 related protein (.1)		Lus10026846 [exp]	61.0	0.6932

Compare expression of checked genes

Lus10026307 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.