Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G01150 63 / 6e-11 Homeodomain-like protein with RING/FYVE/PHD-type zinc finger domain (.1) AT4G12670 62 / 2e-10 Homeodomain-like superfamily protein (.1) AT5G03780 61 / 3e-10 TRFL10 TRF-like 10 (.1) AT1G14770 60 / 7e-10 RING/FYVE/PHD zinc finger superfamily protein (.1.2) AT1G68030 59 / 1e-09 RING/FYVE/PHD zinc finger superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042361 [exp] 237 / 1e-78 AT1G01150 63 / 2e-12 Homeodomain-like protein with RING/FYVE/PHD-type zinc finger domain (.1) Lus10011320 [exp] 189 / 3e-54 AT1G68030 84 / 2e-17 RING/FYVE/PHD zinc finger superfamily protein (.1) Lus10012209 [exp] 183 / 6e-52 AT1G68030 97 / 5e-21 RING/FYVE/PHD zinc finger superfamily protein (.1) Lus10015562 [exp] 64 / 7e-11 AT1G14770 66 / 3e-11 RING/FYVE/PHD zinc finger superfamily protein (.1.2) Lus10020771 [exp] 49 / 3e-06 AT5G58340 70 / 1e-12 myb-like HTH transcriptional regulator family protein (.1.2) Lus10024200 [exp] 45 / 5e-05 AT1G15720 65 / 5e-11 TRF-like 5 (.1) Lus10042209 [exp] 45 / 5e-05 AT1G15720 70 / 1e-12 TRF-like 5 (.1) Lus10007348 [exp] 45 / 6e-05 AT3G23730 355 / 2e-121 xyloglucan endotransglucosylase/hydrolase 16 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G053300 [exp] 158 / 6e-43 AT1G68030 115 / 7e-28 RING/FYVE/PHD zinc finger superfamily protein (.1) Potri.006G054401 [exp] 94 / 7e-21 AT1G68030 104 / 1e-24 RING/FYVE/PHD zinc finger superfamily protein (.1) Potri.002G005600 [exp] 66 / 8e-12 AT5G03780 94 / 1e-20 TRF-like 10 (.1) Potri.013G154500 [exp] 45 / 4e-05 AT5G58340 88 / 4e-18 myb-like HTH transcriptional regulator family protein (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10026308 pacid=23156522 polypeptide=Lus10026308 locus=Lus10026308.g ID=Lus10026308.BGIv1.0 annot-version=v1.0 ATGGCTAGTACGGAAAACATCTGTATTAAATGCGGCAAAAGTGACGGGTTGCTATTTTGTGGTACTAGCGGTTGCGTTTTTGCAATTCATGAAAGCTGCT TCGGCTGTAGACCAGATGTTGATGATAGAGGAAAATTCTACTGTCCTTTTTGTGCACATTCTCGTGCTTTGTCACACTACATGAAAATGAAGGAACGGAT GTCTATGACATTGAAGCAACTAAGAATGTTTCTTCATATAGATTCAGAGAATCCATCGATGGAGCTCTCTGATAGTTCAAAGGACAAAGAGCAGCTGTTC ACTGGTGTAGGTTCTGTTGATGGAGCCGACAGGATTGCAAATTTGAAGGACGGTAAGGGCCATAATTACCATTTTCATATTGGCACAGATCCTGTGGCAC CAATTAGTGAACAAGAACCAAGTAGTGTAGTTTGTACCTCTAGAAGTAATGTGGAGAGACGAATCGGACGAACAGTTGGAGTGTGCCCATCAGTTAGAGT ACCTGAAAGAAAGCAGGACGAAGATCTTCCTAAGCCTCCGTGCTTTGGTGACAATGTATTATGCGAAAACGAAGATATGATTTCAGGACAACAGGTGCCA AGTGAAGGAGCAATCAAGAAACAAGTTATGGAAGAGATTTGTGTGCCCAAACTAGTGATGCCTATTCGTCATATCCCACCGGGTGTAGTATCAGAATCAA ACAATGAAAATGATCAAGCTGGGAACTCCTTGAGTTTGAGGAAGAGAAAACGTGATGATGCGTTGATTTCTACTTTGAAGAATCTGAGCAGCAATGGTCA AGCAATTTCTCCTATGAGACGGAGGAAAGTTCCCTGGACATTGCAGGAAGAAAAGACGCTTAAGGAAGGGTTACAGAAGTTCTCCAACAATGGAAGAATT CCATGGAAAACCATATTGGATTATGGGATTTGTGTTTTTGGTGATGTTCGCACTGCAGAAGATCTTAGGACCAAATGGAAGAATATGTGCAAAGCAAGCC GCACATTGTAG
AA sequence Show only first row Show all	>Lus10026308 pacid=23156522 polypeptide=Lus10026308 locus=Lus10026308.g ID=Lus10026308.BGIv1.0 annot-version=v1.0 MASTENICIKCGKSDGLLFCGTSGCVFAIHESCFGCRPDVDDRGKFYCPFCAHSRALSHYMKMKERMSMTLKQLRMFLHIDSENPSMELSDSSKDKEQLF TGVGSVDGADRIANLKDGKGHNYHFHIGTDPVAPISEQEPSSVVCTSRSNVERRIGRTVGVCPSVRVPERKQDEDLPKPPCFGDNVLCENEDMISGQQVP SEGAIKKQVMEEICVPKLVMPIRHIPPGVVSESNNENDQAGNSLSLRKRKRDDALISTLKNLSSNGQAISPMRRRKVPWTLQEEKTLKEGLQKFSNNGRI PWKTILDYGICVFGDVRTAEDLRTKWKNMCKASRTL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G01150			Homeodomain-like protein with ...		Lus10026308 [exp]	0	1
AT2G43370			RNA-binding (RRM/RBD/RNP motif...		Lus10027015 [exp]	3.5	0.8586
AT3G62330			Zinc knuckle (CCHC-type) famil...		Lus10010000 [exp]	4.5	0.8630
AT1G71840			transducin family protein / WD...		Lus10032994 [exp]	4.9	0.8538
					Lus10024694 [exp]	7.2	0.8648
AT5G66600			Protein of unknown function, D...		Lus10016786 [exp]	10.2	0.8470
AT5G67380		ATCKA1, CKA1	casein kinase alpha 1 (.1.2)		Lus10032849 [exp]	12.8	0.8597
AT5G19670			Exostosin family protein (.1)		Lus10011121 [exp]	16.8	0.8159
AT5G55310		TOP1alpha, TOP1...	DNA topoisomerase 1 beta (.1)		Lus10032572 [exp]	21.2	0.8416
AT5G26610			D111/G-patch domain-containing...		Lus10001513 [exp]	21.8	0.8550
AT5G54890			RNA-binding CRS1 / YhbY (CRM) ...		Lus10019623 [exp]	26.7	0.8452

Compare expression of checked genes

Lus10026308 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.