Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G03270 1056 / 0 DNA-binding protein, putative (.1) AT5G35970 317 / 2e-96 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G47010 190 / 1e-50 ATUPF1, UPF1, LBA1 LOW-LEVEL BETA-AMYLASE 1, RNA helicase, putative (.1) AT4G15570 161 / 2e-41 MAA3 MAGATAMA 3, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT4G30100 154 / 7e-39 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT2G19120 152 / 4e-38 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT1G16800 148 / 8e-37 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT1G08840 147 / 2e-36 EMB2411 embryo defective 2411, DNA replication helicase, putative (.1.2) AT1G05460 133 / 3e-32 SDE3 SILENCING DEFECTIVE, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G37150 127 / 3e-30 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042360 [exp] 724 / 0 AT2G03270 613 / 0.0 DNA-binding protein, putative (.1) Lus10024527 [exp] 345 / 3e-106 AT5G35970 1343 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10024974 [exp] 313 / 4e-99 AT5G35970 825 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10011054 [exp] 184 / 9e-49 AT5G47010 1977 / 0.0 LOW-LEVEL BETA-AMYLASE 1, RNA helicase, putative (.1) Lus10003024 [exp] 184 / 1e-48 AT5G47010 2045 / 0.0 LOW-LEVEL BETA-AMYLASE 1, RNA helicase, putative (.1) Lus10010991 [exp] 153 / 3e-38 AT1G08840 1394 / 0.0 embryo defective 2411, DNA replication helicase, putative (.1.2) Lus10038906 [exp] 145 / 4e-36 AT4G15570 972 / 0.0 MAGATAMA 3, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10037303 [exp] 145 / 6e-36 AT1G16800 1190 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10035717 [exp] 143 / 5e-35 AT1G16800 1196 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G054600 [exp] 1110 / 0 AT2G03270 1058 / 0.0 DNA-binding protein, putative (.1) Potri.013G073900 [exp] 332 / 1e-101 AT5G35970 1414 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.003G086400 [exp] 184 / 1e-48 AT5G47010 2042 / 0.0 LOW-LEVEL BETA-AMYLASE 1, RNA helicase, putative (.1) Potri.001G148100 [exp] 182 / 4e-48 AT5G47010 2008 / 0.0 LOW-LEVEL BETA-AMYLASE 1, RNA helicase, putative (.1) Potri.014G180200 [exp] 157 / 7e-40 AT1G08840 1528 / 0.0 embryo defective 2411, DNA replication helicase, putative (.1.2) Potri.017G056700 [exp] 154 / 6e-39 AT4G15570 1058 / 0.0 MAGATAMA 3, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.002G093500 [exp] 145 / 7e-36 AT4G30100 1637 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.010G253700 [exp] 144 / 2e-35 AT1G16800 1405 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.005G047500 [exp] 143 / 2e-35 AT1G05460 1051 / 0.0 SILENCING DEFECTIVE, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.005G168300 [exp] 142 / 6e-35 AT4G30100 1620 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF04851 [flax] [poplar] ResIII Type III restriction enzyme, res subunit
Representative CDS sequence Show only first row Show all	>Lus10026309 pacid=23156615 polypeptide=Lus10026309 locus=Lus10026309.g ID=Lus10026309.BGIv1.0 annot-version=v1.0 ATGGAGAAGAACAACACGGCGGGGAAGAAAGCTTCTTCATCATCGCCTATGTCCCCCATATCTCTCGAACAATTCGTCTCCACCATGTCTCCTTTGATTG ATATGGAAAAGGAAGCTGAGATTTCAGCCTCCATCACTTCGGGTGCTTCCAGAAACTTGGAAACTGCCCAAAAGCGGGGCTCTGCGCTTATCAATCTAAA GTGCGTCGACGCCCAGACTGGGCTGATGGGGAAAACTCTTCTGGAGTTCCAATCAAACAAAGCAGACGTTCTTCCTGCTCACAAGTTTGGCATCCATGAC GTCGTCATTTTGAAGCCGAACAAGGCTGATTTGGGGGCTCCTAATCTCGGTCAAGGTGTGGTCTATCGCTTGAAGGACACTTCCATAACCGTCGCTTTTG ATGATATGCCTGAAGATGGTTTGAACAGTTCACTACGACTTGAGAAAGTTGCAAATGAGGTTACATATCGTAGGATGAAGGATGCATTGATACAATTGAG TAAAGGTGTGCTGAAGGGACCTGCTGCAGATTTGGTTCCGGTTCTGTTTGGTGAGAGACAGCCAACTACAGCAAAGAAGGATGTTACGTTCACTTCATTT AACTCCAACCTTGACCATTCTCAGAAAGATGCAGTTACAAGGGCACTATCCTCAAAGAATGTGTTTTTATTGCATGGTCCTCCTGGAACGGGGAAAACAA CCACTGTGGTGGAGATAATTTTACAAGAAGTGAAACGTGGGTCAAAGATTCTCGCATGTGCTGCTTCCAACATTGCTGTCGATAATATTGGTGAGAGACT TGTTCCTCACAGAGTAAATTTAGTGAGAATGGGACATCCAGCACGTTTACTGCCTCAAGTATTAGATAGTGCACTTGACGCGAAGGTACTGCGCGGAGAT AACAGCAGTTTGGCTAATGACATTCGTAAGGAGATGAAGGCGTTAAATGGGAAGTTGTTGAAGGCCAAAGACAAAAACACTAGAAGAGAGATCCAGAAAG AGCTCAGAATACTTACGAAAGAAGAGCGTAAAAGACAGCAGTTAGCTGTTAGGGATGTGATTAAAACTGCAGATGTGGTGTTGACAACACTAACTGGTTC TGCTACACGTAAGCTGGACTCAACATCATTTGATTTGGTGATTATTGATGAAGCTGCTCAGGCGCTTGAGATTGCTTGCTGGATGCCTTTGCTAAAGGGG TCTAGATGCGTACTTGCTGGTGACCACCTTCAGCTTCCTCCAACTATCCAGAGTGTTGAAGCAGAGAAGAAAGGGTTGGGAAGAACCCTATTTGAGCGAC TAGCAGATCTCTACGGTGATGAAGTTACCGCTATGCTTACTGTTCAGTACCGCATGCATGAGCTTATTATGAACTGGTCTTCTGAGGAGCTTTATGACAA CAAGATCGAAGCCCATCCAAACGTTGCAGCCCATCTACTGTGTGATCTTGAGAGTGTAAACAAGTCGTCCTCAACAGAACCTACACTGCTTCTTGTGGAT ATAGCAGGGTGTGACATGGAAGAAAAGAAAGACGAAGAAGATAGTACACTGAATGAAGGAGAAGCTAAAGTTGCTATTGCTCATGCGAAGAGACTAGTTC TTTCCGGAGTTCAGGCTTCCGATATCGGAATAATTACACCTTATGCTGCACAGGTCGTTTTGTTGAAAATACTCAGAGGCAGCGAAGACAAGCTAAAGGA GGTGGAGATTTCAACGGTTGATGGGTTCCAGGGTCGGGAGAAGGAAGCTATCATTATTTCAATGGTTCGGTCGAATTCGAAGAACGAGGTTGGGTTTCTA AGTGATAGGAGAAGGATGAACGTTGCAGTGACACGGGCGAGAAGGCAGTGCTGCATTGTTTGTGATTCAGAAACAGTGAGTAGCGACAGGTTTCTGAAGC GATTGGTCGAATATTTCGAGGAGCATGGTGAGTATCTCAGTGCCTCTGAGTACGTCGATGAATAA
AA sequence Show only first row Show all	>Lus10026309 pacid=23156615 polypeptide=Lus10026309 locus=Lus10026309.g ID=Lus10026309.BGIv1.0 annot-version=v1.0 MEKNNTAGKKASSSSPMSPISLEQFVSTMSPLIDMEKEAEISASITSGASRNLETAQKRGSALINLKCVDAQTGLMGKTLLEFQSNKADVLPAHKFGIHD VVILKPNKADLGAPNLGQGVVYRLKDTSITVAFDDMPEDGLNSSLRLEKVANEVTYRRMKDALIQLSKGVLKGPAADLVPVLFGERQPTTAKKDVTFTSF NSNLDHSQKDAVTRALSSKNVFLLHGPPGTGKTTTVVEIILQEVKRGSKILACAASNIAVDNIGERLVPHRVNLVRMGHPARLLPQVLDSALDAKVLRGD NSSLANDIRKEMKALNGKLLKAKDKNTRREIQKELRILTKEERKRQQLAVRDVIKTADVVLTTLTGSATRKLDSTSFDLVIIDEAAQALEIACWMPLLKG SRCVLAGDHLQLPPTIQSVEAEKKGLGRTLFERLADLYGDEVTAMLTVQYRMHELIMNWSSEELYDNKIEAHPNVAAHLLCDLESVNKSSSTEPTLLLVD IAGCDMEEKKDEEDSTLNEGEAKVAIAHAKRLVLSGVQASDIGIITPYAAQVVLLKILRGSEDKLKEVEISTVDGFQGREKEAIIISMVRSNSKNEVGFL SDRRRMNVAVTRARRQCCIVCDSETVSSDRFLKRLVEYFEEHGEYLSASEYVDE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G03270			DNA-binding protein, putative ...		Lus10026309 [exp]	0	1
AT2G15490		UGT73B4	UDP-glycosyltransferase 73B4 (...		Lus10014086 [exp]	4.6	0.9245
AT5G55060			unknown protein		Lus10032631 [exp]	4.9	0.9040
AT3G53990			Adenine nucleotide alpha hydro...		Lus10017207 [exp]	5.1	0.9271
AT2G29420		GST25, ATGSTU7	GLUTATHIONE S-TRANSFERASE 25, ...		Lus10040761 [exp]	6.1	0.9293
					Lus10021752 [exp]	6.2	0.8974
AT4G31970		CYP82C2, JAH1	"cytochrome P450, family 82, s...		Lus10025923 [exp]	7.5	0.9115
AT5G12340			unknown protein		Lus10009698 [exp]	9.7	0.8800
AT3G27890		NQR	NADPH:quinone oxidoreductase (...		Lus10039505 [exp]	10.4	0.9191
AT3G02875		ILR1	IAA-LEUCINE RESISTANT 1, Pepti...		Lus10021321 [exp]	13.0	0.9213
AT3G50470		MLA10, HR3	INTRACELLULAR MILDEW A 10, hom...		Lus10009328 [exp]	13.3	0.9048

Compare expression of checked genes

Lus10026309 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.