Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G57630 1108 / 0 exostosin family protein (.1.2) AT5G22940 103 / 7e-23 F8H FRA8 homolog (.1) AT5G61840 78 / 5e-15 GUT1, IRX10-L Exostosin family protein (.1) AT2G28110 78 / 8e-15 IRX7, FRA8 IRREGULAR XYLEM 7, FRAGILE FIBER 8, Exostosin family protein (.1) AT1G27440 77 / 2e-14 ATGUT1, IRX10, GUT2 Exostosin family protein (.1) AT4G38040 54 / 2e-07 Exostosin family protein (.1) AT1G21480 53 / 8e-07 Exostosin family protein (.1.2) AT5G11130 51 / 3e-06 Exostosin family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042357 [exp] 1555 / 0 AT3G57630 1187 / 0.0 exostosin family protein (.1.2) Lus10043209 [exp] 83 / 2e-16 AT5G61840 773 / 0.0 Exostosin family protein (.1) Lus10032530 [exp] 83 / 2e-16 AT5G61840 773 / 0.0 Exostosin family protein (.1) Lus10041343 [exp] 83 / 3e-16 AT2G28110 608 / 0.0 IRREGULAR XYLEM 7, FRAGILE FIBER 8, Exostosin family protein (.1) Lus10043326 [exp] 80 / 2e-15 AT1G27440 735 / 0.0 Exostosin family protein (.1) Lus10037376 [exp] 77 / 1e-14 AT2G28110 501 / 5e-177 IRREGULAR XYLEM 7, FRAGILE FIBER 8, Exostosin family protein (.1) Lus10019479 [exp] 77 / 1e-14 AT1G27440 731 / 0.0 Exostosin family protein (.1) Lus10018930 [exp] 54 / 4e-07 AT1G21480 612 / 0.0 Exostosin family protein (.1.2) Lus10028632 [exp] 53 / 7e-07 AT1G21480 704 / 0.0 Exostosin family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G054800 [exp] 1203 / 0 AT3G57630 1239 / 0.0 exostosin family protein (.1.2) Potri.012G109200 [exp] 83 / 2e-16 AT5G61840 752 / 0.0 Exostosin family protein (.1) Potri.012G109600 [exp] 83 / 2e-16 AT5G61840 750 / 0.0 Exostosin family protein (.1) Potri.001G068100 [exp] 80 / 2e-15 AT1G27440 752 / 0.0 Exostosin family protein (.1) Potri.009G006500 [exp] 80 / 2e-15 AT2G28110 596 / 0.0 IRREGULAR XYLEM 7, FRAGILE FIBER 8, Exostosin family protein (.1) Potri.003G162000 [exp] 79 / 3e-15 AT1G27440 705 / 0.0 Exostosin family protein (.1) Potri.015G116700 [exp] 76 / 2e-14 AT5G61840 619 / 0.0 Exostosin family protein (.1) Potri.014G170900 [exp] 53 / 8e-07 AT3G07620 572 / 0.0 Exostosin family protein (.1) Potri.018G043700 [exp] 53 / 9e-07 AT5G25820 635 / 0.0 Exostosin family protein (.1) Potri.002G072300 [exp] 50 / 5e-06 AT1G21480 695 / 0.0 Exostosin family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03016 [flax] [poplar] Exostosin Exostosin family
Representative CDS sequence Show only first row Show all	>Lus10026311 pacid=23156527 polypeptide=Lus10026311 locus=Lus10026311.g ID=Lus10026311.BGIv1.0 annot-version=v1.0 ATGATTGCGGTGGTGCAGAAATGGAAATGCTCGTGGTCTATGACTGCTGGAATTGCTTCAGCAGTGGCATTGGTTTCAATAGTTTCTCTATTTCTGTTTC CTGTGGATCCTTCATTTGATTACCTGAGGATCCGTGATGCTACCCTGAGTAGATGTGTCCTTCCTAACGGAACACTTGGACCAGGAGCTGGAACTGGACA GGTTTGGCAAAATTTGCAACCTAGTGTAGATCTGCACCGTAGGTTTCCTGGCGATTTGCACGGGGCAGTGGTTTATCGCCAGACGCCATGGATGGCTGAG ATTGGAAGGTGGCTTTCAGGTTGTGATCCATTTGCTAAGGAAGCCAGCATTTCCGAGATAATAGGTGGAAGGGGCTGCAAAGATGACTGTAATGGTCAAG GTGTTTGTAACTATGAATTGGGAGCACTCATTGTTTTCATAACTGCTCTATCCTATGAAACACTGTTGCCTGGCTCTTTAACAGTTTCAAAATACTCACT TTCACATGTCATCATTGCTGATGGAGTAGGGGAAGGATGCTCTGAGAGAATACAGCTGAAATGTAACCATCCTACTACACCAGAGCAACCATATGGGCGA TGGGTTGTTTCAATTTGCGCAACGCACTGTGATACAACAAGAGCTATGTGCTTCTGTGGCGAGGGTACAAAATATCCAAATCGTCCCGTTGCAGAAGCTT GTGGTTTCCAAGTGAACGTACCTGTTGAACCTGATGCTCCCAAATTGACGGATTGGTCAAAAGACGACCTAGAAAATATTTTCACAACAAACAGTAGCAA AGCAGGGTGGTGCAATGTTGACCCTGCCGAAGCATATGCTTCGACGGTGAAATTCAAAGAGGAATGTGACTGCAAGTATGATGGTCTTTCTGGGCGATTT TGCGAGGTGCCTGTACAAAGTGTGTGTATTAATCAGTGCTCTGGACATGGGCATTGCCGTGGTGGCTTTTGTCAGTGTCGCAGTGGATGGTATGGGATAG ACTGTAGCATCCCTTCTGTTCTATCGCCATTAAGCGGCTGGCCTAGGTGGCTTCGCCCTTCTCAGCTTGATATTCCTGAAAACGGGAACATGTCCACTAA ACTATTCAGTCTTAATGCTCTTGTTAAGAAGAAGAGGCCCTTGGTCTATGTATATGATTTGCCTCCAGAGTTCAATAGTTTGCTTCTTGAGGGGAGGCAT TTTAAGCTCGAATGCGTTAACAGAATCTACGACGATAGGAATGCAACAATATGGACAGACCAACTTTATGGGTCTCAGATTGCAATTTACGAAAGTCTTT TAGCTAGTGCACATCGTACATTGAATGGTGAAGAAGCTGACTTTTTCTTTGTCCCTGTTCTTGATTCATGCATCATCACTCGAGCAGATGATGCACCTCA CTTGGGATTGGAGGAACATAGGGGCATAAGGAGCTCTTTCACGTTGGAGATATATCGGAAGGCATATGATCATATAGTTGAGCATTATCCTTTTTGGAAC CGTTCACTGGGCAGAGACCACATTTGGTCTTTTTCATGGGATGAAGGTGCTTGTTACGCTCCTAAGGAGATATGGAACAGCATGATGTTGGTTCATTGGG GGAATACGAATTCTAAGCATAATCATTCAACGACAGCCTATTGGGCTGATAACTGGAATAACATCACGTCTGATAGAAGAGGCACTCATCCATGCTTTGA TCCTGACAAAGATCTTGTACTTCCTGCCTGGAAACGCCCTGATGCCAGTTCCTTAAGCATGAAACTTTGGGCCCGGCCTCTTGAGATGCGGAAGACATTA TTCTACTTCAATGGAAATCTTGGACCAGCATATGAATTTGGAAGGCCAGAAGCTTCGTATAGTTTGGGTATCAGGCAGAAACTTGCTGAAGAGTTTGGAT CAAGCCCTAACAAGGACGGGAAGCTTGGGAAGCAGCACGTAGATGATGTAATTGTAACATCAATGCGCACTGAAAATTATCACGTTGATCTAGCAAGTTC AGTATTTTGTGGAGTACTGCCTGGAGATTATTGGCTGGAGATGGTTGGAGTGGCCGTATGGAAGATAGCATCTTGCAAGGTTGTATTCCTGTGGTCATTC AGGTACAGTAATTTCTGCATAGCCCTGTCCATGGATGGGATTTTTCTGCCATATGAGAATGTGCTAAACTTTGTAAGTTTCGCGGTCAGAATTCAAGAAG ACGAAATCCCGAACTTGATAAAAGTTCTTAGGGCATTCAATGATACAGAAATCGGATTCAAGTTGAGGAATGTACAGAAACTATGGCAGAGATTCGTGTA TCGGGATTCGTTGTTGCTTGAAGCTGAGAGACAGAAAACCGAATTGGGATTCGTGGAAGATTGGGCAGTTGAAGTATCAAAATTGACTGAGGATGATGTC TTCGCAACATTTCTCCAGATTCTGCACTACAAGTTGCATAATGATCCATGGAGGGAGCAGGTTGGTGATGGGAATAAAGATTTTGGAGTTCCTCGAGAAT GCTTAAGGGAAGGAAGCAAATGGAAGAAGGATCCATAA
AA sequence Show only first row Show all	>Lus10026311 pacid=23156527 polypeptide=Lus10026311 locus=Lus10026311.g ID=Lus10026311.BGIv1.0 annot-version=v1.0 MIAVVQKWKCSWSMTAGIASAVALVSIVSLFLFPVDPSFDYLRIRDATLSRCVLPNGTLGPGAGTGQVWQNLQPSVDLHRRFPGDLHGAVVYRQTPWMAE IGRWLSGCDPFAKEASISEIIGGRGCKDDCNGQGVCNYELGALIVFITALSYETLLPGSLTVSKYSLSHVIIADGVGEGCSERIQLKCNHPTTPEQPYGR WVVSICATHCDTTRAMCFCGEGTKYPNRPVAEACGFQVNVPVEPDAPKLTDWSKDDLENIFTTNSSKAGWCNVDPAEAYASTVKFKEECDCKYDGLSGRF CEVPVQSVCINQCSGHGHCRGGFCQCRSGWYGIDCSIPSVLSPLSGWPRWLRPSQLDIPENGNMSTKLFSLNALVKKKRPLVYVYDLPPEFNSLLLEGRH FKLECVNRIYDDRNATIWTDQLYGSQIAIYESLLASAHRTLNGEEADFFFVPVLDSCIITRADDAPHLGLEEHRGIRSSFTLEIYRKAYDHIVEHYPFWN RSLGRDHIWSFSWDEGACYAPKEIWNSMMLVHWGNTNSKHNHSTTAYWADNWNNITSDRRGTHPCFDPDKDLVLPAWKRPDASSLSMKLWARPLEMRKTL FYFNGNLGPAYEFGRPEASYSLGIRQKLAEEFGSSPNKDGKLGKQHVDDVIVTSMRTENYHVDLASSVFCGVLPGDYWLEMVGVAVWKIASCKVVFLWSF RYSNFCIALSMDGIFLPYENVLNFVSFAVRIQEDEIPNLIKVLRAFNDTEIGFKLRNVQKLWQRFVYRDSLLLEAERQKTELGFVEDWAVEVSKLTEDDV FATFLQILHYKLHNDPWREQVGDGNKDFGVPRECLREGSKWKKDP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G57630			exostosin family protein (.1.2...		Lus10026311 [exp]	0	1
AT3G33530			Transducin family protein / WD...		Lus10043261 [exp]	6.8	0.6907
AT2G44480		BGLU17	beta glucosidase 17 (.1.2)		Lus10003915 [exp]	9.5	0.6587
AT2G03620		AtMRS2-5, AtMGT...	magnesium transporter 3 (.1.2)		Lus10036901 [exp]	12.0	0.6482
AT4G35140			Transducin/WD40 repeat-like su...		Lus10025088 [exp]	13.0	0.6772
AT5G65290			LMBR1-like membrane protein (....		Lus10035927 [exp]	15.6	0.6616
AT5G06440			unknown protein		Lus10029362 [exp]	16.6	0.6543
AT4G05090			Inositol monophosphatase famil...		Lus10006739 [exp]	18.3	0.6164
AT1G04790			RING/U-box superfamily protein...		Lus10023671 [exp]	25.8	0.6661
AT2G17280			Phosphoglycerate mutase family...		Lus10032820 [exp]	33.8	0.6073
AT4G00620		EMB3127	EMBRYO DEFECTIVE 3127, Amino a...		Lus10012502 [exp]	47.3	0.6442

Compare expression of checked genes

Lus10026311 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.