Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G12170 350 / 2e-122 Chaperone DnaJ-domain superfamily protein (.1) AT5G06910 327 / 8e-113 ATJ6, EMB1393 J-domain protein 6 (.1) AT3G62600 76 / 2e-15 ATERDJ3B DNAJ heat shock family protein (.1) AT5G48030 76 / 3e-15 GFA2 gametophytic factor 2 (.1) AT1G59980 76 / 3e-15 GPS4, ARL2 ,ATDJC39 gravity persistence signal 4, ARG1-like 2 (.1) AT1G56300 71 / 8e-15 Chaperone DnaJ-domain superfamily protein (.1) AT4G39150 73 / 2e-14 DNAJ heat shock N-terminal domain-containing protein (.1.2) AT2G21510 73 / 2e-14 DNAJ heat shock N-terminal domain-containing protein (.1) AT5G03160 72 / 4e-14 ATP58IPK homolog of mamallian P58IPK (.1) AT5G01390 70 / 6e-14 DNAJ heat shock family protein (.1.2.3.4)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042353 [exp] 513 / 0 AT3G12170 356 / 1e-124 Chaperone DnaJ-domain superfamily protein (.1) Lus10013402 [exp] 378 / 1e-132 AT3G12170 361 / 2e-126 Chaperone DnaJ-domain superfamily protein (.1) Lus10010323 [exp] 371 / 9e-130 AT3G12170 363 / 4e-127 Chaperone DnaJ-domain superfamily protein (.1) Lus10035855 [exp] 80 / 2e-16 AT5G48030 524 / 0.0 gametophytic factor 2 (.1) Lus10036638 [exp] 79 / 2e-16 AT5G48030 516 / 0.0 gametophytic factor 2 (.1) Lus10011934 [exp] 79 / 4e-16 AT5G48030 499 / 8e-176 gametophytic factor 2 (.1) Lus10027634 [exp] 77 / 2e-15 AT5G48030 494 / 8e-174 gametophytic factor 2 (.1) Lus10022297 [exp] 75 / 4e-15 AT3G62600 522 / 0.0 DNAJ heat shock family protein (.1) Lus10020685 [exp] 70 / 2e-14 AT1G56300 200 / 1e-66 Chaperone DnaJ-domain superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G051800 [exp] 388 / 8e-137 AT3G12170 353 / 2e-123 Chaperone DnaJ-domain superfamily protein (.1) Potri.006G056400 [exp] 379 / 6e-133 AT3G12170 370 / 5e-130 Chaperone DnaJ-domain superfamily protein (.1) Potri.014G122600 [exp] 76 / 3e-15 AT3G62600 565 / 0.0 DNAJ heat shock family protein (.1) Potri.002G198000 [exp] 74 / 8e-15 AT3G62600 551 / 0.0 DNAJ heat shock family protein (.1) Potri.008G123200 [exp] 73 / 2e-14 AT1G68370 670 / 0.0 ALTERED RESPONSE TO GRAVITY 1, Chaperone DnaJ-domain superfamily protein (.1) Potri.017G016100 [exp] 72 / 5e-14 AT2G20560 420 / 7e-148 DNAJ heat shock family protein (.1) Potri.009G065500 [exp] 72 / 5e-14 AT5G48030 504 / 1e-177 gametophytic factor 2 (.1) Potri.016G120000 [exp] 72 / 6e-14 AT3G08970 479 / 6e-164 THERMOSENSITIVE MALE STERILE 1, DNAJ heat shock N-terminal domain-containing protein (.1) Potri.004G158300 [exp] 71 / 6e-14 AT4G39150 469 / 2e-167 DNAJ heat shock N-terminal domain-containing protein (.1.2) Potri.007G136700 [exp] 71 / 7e-14 AT2G20560 416 / 5e-146 DNAJ heat shock family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0392 [flax] [poplar] Chaperone-J PF00226 [flax] [poplar] DnaJ DnaJ domain
Representative CDS sequence Show only first row Show all	>Lus10026315 pacid=23156454 polypeptide=Lus10026315 locus=Lus10026315.g ID=Lus10026315.BGIv1.0 annot-version=v1.0 ATGGGAAAGAGAAAGAAATCTAGGGTTTCACGCGAAGATGAGGAAGTCGAATTGGAAGGAGAAGAAGAACGACACGAGGATCAGACTGATGATGAGACCA CCAACCAGCCTTCTGGAGATGAGAAAAGCCTTTACGAGGTTCTTGGTGTTAAGAAGACGGCCACTCAGCAAGAGATAAAGAAAGCATACCACAAATTGGC CCTGAGACTCCATCCCGACAAAAACCCAGGTGATGAGGAAGCGAAAGAGAAGTTTCAGCAATTACAGAAGGTGATTTCCATTCTCGGAGATGAGGAAAAG CGGGCAGTCTATGACCAAACTGGCTGTGTTGATGACGCTGACCTTGCAGGTGATGTTGTCCAGAATTTGAAAGAATTTTTCAGAACAATGTACAAAAAGG TCACCGAAGCTGATATTGAGGAGTTTGAAGCAAATTATAGAGGATCCGATTCGGAGAAAAATGACTTGGTTGACCTTTATAAGCAGTGCAAGGGTAGTAT GAATAGGGTCTTCTGTTCTATGCTCTGCTCTGACCCTAAGCTTGATTCACACCGATTCAAAGTCATACTGGATGAGGCAATATCTGCAGGAGAAGTGAAA GCAACTAAAGGTTACGAGAAATGGGGAAAGAAAATAGCAATAACGAAGGCGCCTAAGAGTCCGTTGAGAAGGAGAGGGAAACAGAAGCACAGAGCGGCGG AAGACAATCTACTTGCTCTTATGGCGAATAGGCAGAGTGAGAGGAAAGATCGGTTTGAGTCAATGTTCTCTTCGCTTGTGTCCAAATATGGTGAAGGTAG CACACCATCGGAACCAACTGATGAAGAATTTGAAGCCACCAGAAAGAAAATGGAGAGCCGTAGCGCATCATCATCCAAGAAGGCAAATAGAAAGTAG
AA sequence Show only first row Show all	>Lus10026315 pacid=23156454 polypeptide=Lus10026315 locus=Lus10026315.g ID=Lus10026315.BGIv1.0 annot-version=v1.0 MGKRKKSRVSREDEEVELEGEEERHEDQTDDETTNQPSGDEKSLYEVLGVKKTATQQEIKKAYHKLALRLHPDKNPGDEEAKEKFQQLQKVISILGDEEK RAVYDQTGCVDDADLAGDVVQNLKEFFRTMYKKVTEADIEEFEANYRGSDSEKNDLVDLYKQCKGSMNRVFCSMLCSDPKLDSHRFKVILDEAISAGEVK ATKGYEKWGKKIAITKAPKSPLRRRGKQKHRAAEDNLLALMANRQSERKDRFESMFSSLVSKYGEGSTPSEPTDEEFEATRKKMESRSASSSKKANRK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G12170			Chaperone DnaJ-domain superfam...		Lus10026315 [exp]	0	1
AT1G67230		CRWN1, LINC1	CROWDED NUCLEI 1, little nucle...		Lus10003074 [exp]	1.4	0.8724
AT2G25180	GARP	ARR12	response regulator 12 (.1)		Lus10005340 [exp]	3.0	0.8566
AT2G03620		AtMRS2-5, AtMGT...	magnesium transporter 3 (.1.2)		Lus10037081 [exp]	3.2	0.8574
AT2G45280		ATRAD51C	RAS associated with diabetes p...		Lus10000790 [exp]	3.7	0.8484
AT5G26770			unknown protein		Lus10031444 [exp]	4.0	0.8528
AT3G28760			unknown protein		Lus10005250 [exp]	6.3	0.8523
AT5G34940		ATGUS3	glucuronidase 3 (.1.2.3)		Lus10001923 [exp]	8.8	0.8498
AT3G47390		PHS1	PHOTOSENSITIVE 1, cytidine/deo...		Lus10026832 [exp]	10.4	0.8037
AT3G25680			unknown protein		Lus10021714 [exp]	10.7	0.8152
AT4G18470		SNI1	SUPPRESSOR OF NPR1-1, INDUCIBL...		Lus10025429 [exp]	10.8	0.8377

Compare expression of checked genes

Lus10026315 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.