Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G17380 297 / 7e-105 AP19 associated protein 19 (.1) AT4G35410 290 / 3e-102 Clathrin adaptor complex small chain family protein (.1.2) AT1G47830 170 / 7e-55 SNARE-like superfamily protein (.1) AT2G19790 123 / 2e-36 SNARE-like superfamily protein (.1) AT3G50860 105 / 4e-29 Clathrin adaptor complex small chain family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042352 [exp] 328 / 9e-117 AT2G17380 297 / 3e-104 associated protein 19 (.1) Lus10003641 [exp] 228 / 3e-77 AT4G35410 251 / 8e-87 Clathrin adaptor complex small chain family protein (.1.2) Lus10024337 [exp] 172 / 2e-54 AT1G47830 274 / 5e-95 SNARE-like superfamily protein (.1) Lus10012924 [exp] 122 / 6e-36 AT2G19790 280 / 6e-99 SNARE-like superfamily protein (.1) Lus10035004 [exp] 112 / 2e-32 AT2G19790 262 / 6e-92 SNARE-like superfamily protein (.1) Lus10041742 [exp] 100 / 7e-27 AT3G50860 278 / 6e-97 Clathrin adaptor complex small chain family protein (.1) Lus10024011 [exp] 85 / 5e-21 AT3G50860 215 / 3e-72 Clathrin adaptor complex small chain family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G052000 [exp] 286 / 8e-101 AT2G17380 307 / 6e-109 associated protein 19 (.1) Potri.002G001800 [exp] 287 / 1e-100 AT2G17380 278 / 3e-97 associated protein 19 (.1) Potri.014G079000 [exp] 282 / 6e-99 AT4G35410 291 / 1e-102 Clathrin adaptor complex small chain family protein (.1.2) Potri.005G238701 [exp] 171 / 2e-55 AT1G47830 275 / 8e-97 SNARE-like superfamily protein (.1) Potri.002G022900 [exp] 167 / 6e-54 AT1G47830 278 / 6e-98 SNARE-like superfamily protein (.1) Potri.006G149100 [exp] 124 / 7e-37 AT2G19790 287 / 1e-101 SNARE-like superfamily protein (.1) Potri.007G025400 [exp] 117 / 1e-33 AT3G50860 296 / 1e-104 Clathrin adaptor complex small chain family protein (.1) Potri.005G122900 [exp] 114 / 8e-33 AT3G50860 286 / 1e-100 Clathrin adaptor complex small chain family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0431 [flax] [poplar] PF PF01217 [flax] [poplar] Clat_adaptor_s Clathrin adaptor complex small chain
Representative CDS sequence Show only first row Show all	>Lus10026316 pacid=23156552 polypeptide=Lus10026316 locus=Lus10026316.g ID=Lus10026316.BGIv1.0 annot-version=v1.0 ATGGAGGGTGGGAGAGCATTTCGCGGAATTCACTTCGTTCTTCTCATCAGTCGTCAGGGGAAAGTGAGGCTGACGAAATGGTACTCTCCTTACACCCAGA AGGAACGATCTAAGGTCATCAGGGAGCTGAGTGGAATAGTGCTGAATCGGGGTCCGAAGCTCTGCAATTTCGTCGAATGGAGAGGGTACAGGGTTATCTA CAGGAGGTACGCAGGGTTGTATTTCTGCATGTGCATTGACGAGGCGGACAATGAGTTGGAGGTTCTTGACATCATTCACCACTTTGTCGAAATACTCGAT CGATATTTCGGTAGCGTATGTGAATTGGACTTGATCTTCAATTTTCACAAGGCATACTACATACTGGATGAGACCCTGATAGCAGGGGAATTTCAGGAAT CGAGTAAACGAGCTGTGATACGATTGATGTCCACGCATGATTCGATGGTGGAGATGGCCAAGGAGGAGGCCACTTCCATCAGCAATATGATTGCCCAAGT CACCAAATAG
AA sequence Show only first row Show all	>Lus10026316 pacid=23156552 polypeptide=Lus10026316 locus=Lus10026316.g ID=Lus10026316.BGIv1.0 annot-version=v1.0 MEGGRAFRGIHFVLLISRQGKVRLTKWYSPYTQKERSKVIRELSGIVLNRGPKLCNFVEWRGYRVIYRRYAGLYFCMCIDEADNELEVLDIIHHFVEILD RYFGSVCELDLIFNFHKAYYILDETLIAGEFQESSKRAVIRLMSTHDSMVEMAKEEATSISNMIAQVTK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G17380		AP19	associated protein 19 (.1)		Lus10026316 [exp]	0	1
AT3G56960		PIP5K4	phosphatidyl inositol monophos...		Lus10027306 [exp]	8.8	0.8992
AT4G16295		SPH1	S-protein homologue 1 (.1)		Lus10042506 [exp]	22.0	0.8766
AT3G57030			Calcium-dependent phosphotries...		Lus10009651 [exp]	22.6	0.8066
AT1G18650		PDCB3	plasmodesmata callose-binding ...		Lus10021157 [exp]	27.4	0.8728
AT3G61430		ATPIP1, PIP1;1,...	PLASMA MEMBRANE INTRINSIC PROT...		Lus10026295 [exp]	29.4	0.8724
AT5G14920			Gibberellin-regulated family p...		Lus10039443 [exp]	36.5	0.8712
AT2G20515			unknown protein		Lus10022928 [exp]	37.5	0.8704
AT2G42560			late embryogenesis abundant do...		Lus10002197 [exp]	39.3	0.8707
					Lus10027902 [exp]	40.9	0.8679
AT3G12210			DNA binding (.1.2)		Lus10007717 [exp]	48.5	0.8651

Compare expression of checked genes

Lus10026316 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.