Plant FIBer expression Database

Lus10026317 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G42310 173 / 1e-55 unknown protein
AT3G57785 169 / 4e-54 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10042351
[exp]
232 / 7e-79 AT2G42310 169 / 6e-56 unknown protein
Lus10011305
[exp]
197 / 3e-65 AT2G42310 164 / 1e-53 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.016G051400
[exp]
182 / 2e-59 AT2G42310 169 / 5e-56 unknown protein
Potri.006G056900
[exp]
176 / 1e-56 AT3G57785 156 / 6e-51 unknown protein
PFAM info
Representative CDS sequence
>Lus10026317 pacid=23156593 polypeptide=Lus10026317 locus=Lus10026317.g ID=Lus10026317.BGIv1.0 annot-version=v1.0
ATGACTGTGGCACTAGAATGGGAGCCACCTGGTGTTACATCCGGAGAAATACCTAGGAAGGTGCCCACGCATCACGTACCTTTCTGGATTCTGATTCACG
ACCTCCCACAAGGGTACTTCTCGGTCGCGGCCAGAAGATTCCTCGAGGACTTTGTTGGGAGCTTCTGCTCCTATTATCCAACAAACGACGCCAAGTCCCA
AGCAGACGCGTTCATGCGTATCCTAGTGACCTTGGACGTGTGTCGGCTTCTCCGCTTGGAGAAGAAGTTAAGTCTCTATGAGTCTTCTTTGAATATATGC
ACCGGAAACGGAACAATGCCTACGCTGCAACCCTTCACGGCGGCGTCCACCATGCTCCGCCAACGGCTGGCTGGATCTCTCCGTACCCGCGGCGGCCACT
CTGGACCTAGCCCATGGGTAACCCCAGGCCACGAGGAGCGTCCCAAGGGCTACCTATTCAGCCGGACTCCGCCGCCTCCTGGACAGTCCCGCAAGTGGGA
GGACTGGGAGCTTCCTTGCTACATCACCAGCTTCCTCACCATCGTCATCCTTGGCGTCGGCCTCAACTCCAAGCCCGATCTCACCATCGAGACATGGGCT
CACCAGAAGGCCCTAGAGCGCCTCGAGATGGAGAAATTAGCTCTCTCTTCCACTGATTCCGATTGA
AA sequence
>Lus10026317 pacid=23156593 polypeptide=Lus10026317 locus=Lus10026317.g ID=Lus10026317.BGIv1.0 annot-version=v1.0
MTVALEWEPPGVTSGEIPRKVPTHHVPFWILIHDLPQGYFSVAARRFLEDFVGSFCSYYPTNDAKSQADAFMRILVTLDVCRLLRLEKKLSLYESSLNIC
TGNGTMPTLQPFTAASTMLRQRLAGSLRTRGGHSGPSPWVTPGHEERPKGYLFSRTPPPPGQSRKWEDWELPCYITSFLTIVILGVGLNSKPDLTIETWA
HQKALERLEMEKLALSSTDSD

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT2G42310 unknown protein Lus10026317
[exp]
0 1
AT5G08060 unknown protein Lus10034681
[exp]
1.7 0.8606
AT5G11770 NADH-ubiquinone oxidoreductase... Lus10039485
[exp]
4.0 0.8468
AT1G01840 unknown protein Lus10041376
[exp]
6.7 0.8352
AT2G17265 DMR1, HSK DOWNY MILDEW RESISTANT 1, homo... Lus10001387
[exp]
8.3 0.8439
AT3G05100 S-adenosyl-L-methionine-depend... Lus10033850
[exp]
9.8 0.8051
AT3G07480 2Fe-2S ferredoxin-like superfa... Lus10009565
[exp]
11.0 0.8400
AT1G69910 Protein kinase superfamily pro... Lus10036691
[exp]
14.4 0.8192
AT1G80870 Protein kinase superfamily pro... Lus10026069
[exp]
14.5 0.8075
AT4G02580 NADH-ubiquinone oxidoreductase... Lus10018762
[exp]
17.7 0.7782
AT1G15710 prephenate dehydrogenase famil... Lus10023121
[exp]
18.2 0.8327

Lus10026317 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.