Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G57790 629 / 0 Pectin lyase-like superfamily protein (.1) AT4G33440 96 / 2e-20 Pectin lyase-like superfamily protein (.1) AT5G41870 92 / 2e-19 Pectin lyase-like superfamily protein (.1) AT2G23900 89 / 1e-18 Pectin lyase-like superfamily protein (.1) AT3G48950 89 / 2e-18 Pectin lyase-like superfamily protein (.1) AT4G23820 87 / 7e-18 Pectin lyase-like superfamily protein (.1) AT3G61490 83 / 2e-16 Pectin lyase-like superfamily protein (.1.2.3) AT3G62110 81 / 8e-16 Pectin lyase-like superfamily protein (.1) AT3G42950 80 / 2e-15 Pectin lyase-like superfamily protein (.1) AT1G19170 74 / 1e-13 Pectin lyase-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042350 [exp] 667 / 0 AT3G57790 523 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10042349 [exp] 182 / 7e-51 AT3G57800 260 / 3e-83 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) Lus10011307 [exp] 94 / 2e-20 AT3G57800 291 / 3e-96 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) Lus10040506 [exp] 90 / 5e-19 AT3G57800 275 / 3e-90 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) Lus10038030 [exp] 91 / 7e-19 AT3G62110 632 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10014799 [exp] 90 / 1e-18 AT4G33440 630 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10027516 [exp] 90 / 2e-18 AT3G48950 629 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10023101 [exp] 88 / 6e-18 AT4G23820 642 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10039279 [exp] 86 / 2e-17 AT3G48950 624 / 0.0 Pectin lyase-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G051200 [exp] 692 / 0 AT3G57790 642 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.006G057100 [exp] 122 / 8e-33 AT3G57790 102 / 5e-27 Pectin lyase-like superfamily protein (.1) Potri.006G057200 [exp] 111 / 2e-26 AT3G57800 280 / 2e-92 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) Potri.016G051100 [exp] 104 / 3e-24 AT3G57800 305 / 8e-102 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) Potri.014G112100 [exp] 99 / 1e-21 AT3G62110 649 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.003G131700 [exp] 94 / 4e-20 AT3G61490 688 / 0.0 Pectin lyase-like superfamily protein (.1.2.3) Potri.002G186900 [exp] 94 / 5e-20 AT3G62110 666 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.001G100000 [exp] 92 / 2e-19 AT4G23500 701 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.006G139500 [exp] 87 / 1e-17 AT3G42950 786 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.008G211500 [exp] 84 / 1e-16 AT3G16850 509 / 2e-179 Pectin lyase-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0268 [flax] [poplar] Pec_lyase-like PF00295 [flax] [poplar] Glyco_hydro_28 Glycosyl hydrolases family 28
Representative CDS sequence Show only first row Show all	>Lus10026318 pacid=23156509 polypeptide=Lus10026318 locus=Lus10026318.g ID=Lus10026318.BGIv1.0 annot-version=v1.0 ATGGAACAGCTGCTATCAGCTGCACCCGATGCTAGATCCAACGAAACTGCTCTTGATTCCGTCCAATTTGGGGATGATATCCGCCCCTTAATCACCGTCC CGACTGAAAATTCGAGGTCCTTCACCGCTCTCCTCGGTTTGCCGGCCAATCAGGCCATGGAGCTACTCCACTCGCCTCCTGACTCTACCTTCAAGACCTC ACCCGACGGCCCCGAGCTGTACCAACCGCCTCACTACTTCAATGCCGACTTGCTCACCTTCCCCGCCAACGCCGCCTTGATTGAGCGCGCGGTTTTGAAC AACAATAACAGCAGTACCACCGGTAACATTTCGCCCGGGATGAAGTCAATCACATGGGCCACATCATTTAATAAAAACCGGAGCCATGAAAGTGGATCTC TAATGGATAGCAACTTCCCAGCTATGATGATGCCTATTATGTGGCCAGAAATCCAAGAAAATGGGAGCAGACAACAGTATCAACAACAATGGAATTCGGA TGCTGTTCACCAGCCAACTTGGGGGAAAGAAGACGGCCACAGCAACTTCATGACCCGAGAGAACTCGCTGTTGAGTTACGTCTCCTCTGCAAATTCAGCA TCTCTACCAATTGCCAAGATCCATCCGCAAATCAAATCCAATCCCCCTCCCTGTCAAAGAATGCCAACTCTGCTTCTCTACTCCATCATCCTCCATTTCA TCTCCTCCCTCTCAATCCTTCCCGCCTCTTCTTCATCATCTTCACTCCCTACAACAATCCAACTCCCTCACCCGCCCTCTCCTACCACCGCCGCCTCCGT CACTGACTATGGCGCCACCGGCGACGGAGCTCACTACGACACCTACGCCATCCAATCCGCAATCGACTCTTGCTCTCATTCCTCCTGCTCCTCCTCCTCC TCCTCCACCTGCTACGTCACCTTCCCGCCAGGAACCTACCTAACCGCCACCATCCACCTCAGGTCCAACGTCATCCTCGATATCCAACCCGGCGCAGTCC TCTTGGGCGGCCCAAGGTTGGAGGACTACCCCAAGCAGTCCAGCAGGTGGTACGTGGTCCTGGCGGAAAACGCCACGGACGTCGGGATCACCGGCGGGGG AATTGTCGACGGCAACGGCCCATTGTTTGTGCAGAAGTACAACAGCGTGAAAAACGTGATGGTGAGCTGGAACGCCACTGGCGATTGTTTGGGGGACGAG TGCCGCCCTCGATTGGTTGGTTTCATCGGCTGCACTAACGTCCGTGTCTGGAATGTTAGCTTCATCCAGCCCGCTTACTGGTGCTTTCACCTGGTAAGGT GCAGCAACTCTCTAATCCATGATGTTTCTATATACGGCGACTTCAACACGCCCAACAACGATGGGATCGACATTGAAGATTCGAATAATACGTTCATCAC ACGATGCCATATTGACACGGGGGATGACGCCATTTGTCCCAAGACATACACAGGGCCCCTCTATAACTTGACTGTAACCGATTGTTGGATTCGAACAAAA TCTTCAGCTATCAAGCTTGGGAGTGCTAGTTGGTTTGATTTTAAAGGGCTGACCTTTGACAACATCACCATCGTGGATTCGCACAGGGGACTTGGATTTC AGATACGAGATGGAGGAAATGTGAGCGACATCGTCTTCTCCAACATAAACATAAGCACAAGATACTACGACCCATCGTGGTGGGGGAGAGCGGAACCCAT CTACGTGACAACTTGCGCAAGGGACTCGAGTTCAAAGGAAGGCTCCATATCCAACCTCGTCTTCGTCAACATAACTGCGCACTCTGAGAACGGCATCTTC TTATCGGGTTGCAAAGGCGGGAAGCTCAGCAACTTGAGGTTCACAAACGTGAAGCTGACCTACAGAAGGTGGACGAAGTTCGAAGGCGGGTTGGTGGATT ACCGACCCGGATGCCAGGGGCTTGTGAAGCATGGCGCGGCAGGGATGATAATGGAGCATGTGCAAAGCCTTGAGGTTGAGAATGTGAGCATGAGATGGTC CGGTGGTGAAGTTGCTAAAGAAGAATGGGATAACCCTCTTGAGTTTAGACCTTCTACTGTTAATAACGTCTCTTTCCTCAATTTTCATTCGGGGATGTAC TACGATGCCGCACTGTGA
AA sequence Show only first row Show all	>Lus10026318 pacid=23156509 polypeptide=Lus10026318 locus=Lus10026318.g ID=Lus10026318.BGIv1.0 annot-version=v1.0 MEQLLSAAPDARSNETALDSVQFGDDIRPLITVPTENSRSFTALLGLPANQAMELLHSPPDSTFKTSPDGPELYQPPHYFNADLLTFPANAALIERAVLN NNNSSTTGNISPGMKSITWATSFNKNRSHESGSLMDSNFPAMMMPIMWPEIQENGSRQQYQQQWNSDAVHQPTWGKEDGHSNFMTRENSLLSYVSSANSA SLPIAKIHPQIKSNPPPCQRMPTLLLYSIILHFISSLSILPASSSSSSLPTTIQLPHPPSPTTAASVTDYGATGDGAHYDTYAIQSAIDSCSHSSCSSSS SSTCYVTFPPGTYLTATIHLRSNVILDIQPGAVLLGGPRLEDYPKQSSRWYVVLAENATDVGITGGGIVDGNGPLFVQKYNSVKNVMVSWNATGDCLGDE CRPRLVGFIGCTNVRVWNVSFIQPAYWCFHLVRCSNSLIHDVSIYGDFNTPNNDGIDIEDSNNTFITRCHIDTGDDAICPKTYTGPLYNLTVTDCWIRTK SSAIKLGSASWFDFKGLTFDNITIVDSHRGLGFQIRDGGNVSDIVFSNINISTRYYDPSWWGRAEPIYVTTCARDSSSKEGSISNLVFVNITAHSENGIF LSGCKGGKLSNLRFTNVKLTYRRWTKFEGGLVDYRPGCQGLVKHGAAGMIMEHVQSLEVENVSMRWSGGEVAKEEWDNPLEFRPSTVNNVSFLNFHSGMY YDAAL

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G57790			Pectin lyase-like superfamily ...		Lus10026318 [exp]	0	1
AT3G03380		DEG7, DEGP7	degradation of periplasmic pro...		Lus10017637 [exp]	3.0	0.8159
AT5G14880			Potassium transporter family p...		Lus10014531 [exp]	7.6	0.8277
AT4G35750			SEC14 cytosolic factor family ...		Lus10005640 [exp]	14.0	0.8020
AT5G10860		CBSX3	CBS domain containing protein ...		Lus10019117 [exp]	14.5	0.8351
AT2G45170		ATATG8E	AUTOPHAGY 8E (.1.2)		Lus10004352 [exp]	21.0	0.8269
AT3G27010	TCP	ATTCP20, PCF1, ...	ARABIDOPSIS THALIANA TEOSINTE ...		Lus10032022 [exp]	24.8	0.8016
AT3G01990		ACR6	ACT domain repeat 6 (.1)		Lus10012550 [exp]	28.0	0.8238
AT3G56460			GroES-like zinc-binding alcoho...		Lus10028988 [exp]	32.0	0.8165
AT3G02750			Protein phosphatase 2C family ...		Lus10021486 [exp]	34.6	0.8171
AT5G60580			RING/U-box superfamily protein...		Lus10022585 [exp]	38.7	0.8106

Compare expression of checked genes

Lus10026318 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.