Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G34370 788 / 0 ATARI1 ARABIDOPSIS ARIADNE 1, ARIADNE 1, RING/U-box superfamily protein (.1.2) AT2G16090 786 / 0 ATARI2, ARI2, ATARI12 ARABIDOPSIS ARIADNE 2, ARIADNE 2, RING/U-box superfamily protein (.1) AT3G27710 617 / 0 ARARI3, ATARI13 ARABIDOPSIS ARIADNE 3, RING/U-box superfamily protein (.1) AT3G27720 480 / 2e-165 ATARI4, ARI4, ATARI14 ARABIDOPSIS ARIADNE 4, ARIADNE 4, IBR domain containing protein (.1) AT2G31770 212 / 3e-61 ATARI9, ARI9 ARABIDOPSIS ARIADNE 9, ARIADNE 9, RING/U-box superfamily protein (.1) AT2G31760 202 / 5e-58 ATARI10, ARI10 ARABIDOPSIS ARIADNE 10, ARIADNE 10, RING/U-box superfamily protein (.1) AT1G05890 197 / 1e-55 ATARI5, ARI5 ARABIDOPSIS ARIADNE 5, ARIADNE 5, RING/U-box superfamily protein (.1.2) AT2G31510 197 / 2e-55 ATARI7, ARI7 ARABIDOPSIS ARIADNE 7, ARIADNE 7, IBR domain-containing protein (.1) AT2G31780 181 / 5e-51 ATARI11 ARABIDOPSIS ARIADNE 11, ARIADNE 11, RING/U-box superfamily protein (.1) AT1G65430 180 / 2e-49 ATARI8, ARI8 ARABIDOPSIS ARIADNE 8, ARIADNE 8, IBR domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042348 [exp] 1182 / 0 AT4G34370 827 / 0.0 ARABIDOPSIS ARIADNE 1, ARIADNE 1, RING/U-box superfamily protein (.1.2) Lus10040508 [exp] 824 / 0 AT4G34370 746 / 0.0 ARABIDOPSIS ARIADNE 1, ARIADNE 1, RING/U-box superfamily protein (.1.2) Lus10011309 [exp] 806 / 0 AT4G34370 731 / 0.0 ARABIDOPSIS ARIADNE 1, ARIADNE 1, RING/U-box superfamily protein (.1.2) Lus10026856 [exp] 193 / 8e-54 AT1G65430 887 / 0.0 ARABIDOPSIS ARIADNE 8, ARIADNE 8, IBR domain-containing protein (.1) Lus10013371 [exp] 191 / 1e-53 AT2G31510 441 / 2e-150 ARABIDOPSIS ARIADNE 7, ARIADNE 7, IBR domain-containing protein (.1) Lus10027027 [exp] 177 / 1e-48 AT2G31510 807 / 0.0 ARABIDOPSIS ARIADNE 7, ARIADNE 7, IBR domain-containing protein (.1) Lus10025566 [exp] 174 / 5e-47 AT2G31510 826 / 0.0 ARABIDOPSIS ARIADNE 7, ARIADNE 7, IBR domain-containing protein (.1) Lus10020229 [exp] 159 / 2e-41 AT1G65430 833 / 0.0 ARABIDOPSIS ARIADNE 8, ARIADNE 8, IBR domain-containing protein (.1) Lus10000412 [exp] 54 / 2e-07 AT3G14250 228 / 9e-73 RING/U-box superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.T124304 [exp] 856 / 0 AT4G34370 835 / 0.0 ARABIDOPSIS ARIADNE 1, ARIADNE 1, RING/U-box superfamily protein (.1.2) Potri.009G111200 [exp] 856 / 0 AT4G34370 835 / 0.0 ARABIDOPSIS ARIADNE 1, ARIADNE 1, RING/U-box superfamily protein (.1.2) Potri.017G032000 [exp] 198 / 5e-56 AT2G31510 834 / 0.0 ARABIDOPSIS ARIADNE 7, ARIADNE 7, IBR domain-containing protein (.1) Potri.007G126900 [exp] 195 / 8e-55 AT2G31510 836 / 0.0 ARABIDOPSIS ARIADNE 7, ARIADNE 7, IBR domain-containing protein (.1) Potri.008G077100 [exp] 195 / 9e-55 AT1G65430 836 / 0.0 ARABIDOPSIS ARIADNE 8, ARIADNE 8, IBR domain-containing protein (.1) Potri.010G180600 [exp] 194 / 2e-54 AT1G65430 860 / 0.0 ARABIDOPSIS ARIADNE 8, ARIADNE 8, IBR domain-containing protein (.1) Potri.002G131200 [exp] 186 / 1e-51 AT1G65430 571 / 0.0 ARABIDOPSIS ARIADNE 8, ARIADNE 8, IBR domain-containing protein (.1) Potri.002G131300 [exp] 175 / 2e-47 AT1G65430 536 / 0.0 ARABIDOPSIS ARIADNE 8, ARIADNE 8, IBR domain-containing protein (.1) Potri.001G139400 [exp] 56 / 9e-08 AT1G32340 741 / 0.0 NDR1/HIN1-like 8 (.1) Potri.018G064400 [exp] 52 / 7e-07 AT3G53690 273 / 1e-89 RING/U-box superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [flax] [poplar] RING PF01485 [flax] [poplar] IBR IBR domain, a half RING-finger domain
Representative CDS sequence Show only first row Show all	>Lus10026319 pacid=23156380 polypeptide=Lus10026319 locus=Lus10026319.g ID=Lus10026319.BGIv1.0 annot-version=v1.0 ATGGAAGATTACGGAGCGAGCGACGACGAGAACTACTATTCCGATGTCGATCAGGAGGAGTCACTGGATGGTTTTGAAAACGAGGATTCCGCTGTCCCGA GTTCACGGTGCAAGGATTCCACATCGAAGGTGATAACGAAAGAGTCTCTATTTGCTGCACAGACAGAGGACTTACGAAGAGTGATGGAGTTGCTGTCTGT TAGAGAACACCATGCTCGTACTCTGTTGATCTACTACCGTTGGGATGTAGAGAAGTTGTTTTCTGTGCTGGTAGAAAGGGGGAAAGCGCACTTGTTTACG GAAGCAGGTGTTATGGTGGATGCTGATCGAAATAACGATAATAACCAGTGTTCATCTTCTACGGTGACTTGTGAAATATGCATGGAGGAAGTACGGGCCA ATACGTCCACAAGGATTGACTGTGGTCATTGCTTTTGCAACGATTGGCAGAGCAGGCGTATCAGATGTATGGCATTCAAATGCAATGCCATATGTGATGA AGCTGTTGTCAGAAATCTGGTTGGCAAAAGTCATCCTGATCTAGCAGAGAAATTTGAGCGCTTTCTTTTAGAGTCATATATCGAGGATAATAAAATGGTG AAATGGTGCCCCAGTGCTCCACATTGTGGGAATGCTATAAGAATTGAGGAAGATGAGGTCTGTGAAGTGCAATGCTCCTGCGGTTTACAGTTTTGTTTCA GTTGCTTGTCAACGGCGCACTCGCCTTGCTCATGTGTGATGTGGGAGCTTTGGACTAAGAAGTGCCGTGATGAATCTGAAACTGTTAATTGGATGACAGT TCATACAAAGCCTTGTCCAAAGTGTCACAAACCAGTTGAGAAAAATGGTGGCTGCAACCTTGTTAGCTGTGTCTGTGGACAAGCGTTTTGCTGGCTGTGC GGTGGAGCTACTGGCAGAGACCATACATGGACTAGAATTGCTGGTCATAGTTGTGGTCGTTATAAAGAGGACGCAAAGGAAAAAACTGAAAGGGCTAAAC GGGATCTCTATCGGTATATGCACTATCATAACCGGTACAAAGCTCACAAGGATTCATTTAAGCTTGAGAATAAACTCGAGCAGACCATTAAAGATAGGGT GTCAATTTCAGAGCAGAGGGAGTCAACAATACGAGACTTCAGCTGGGTAACGAATGGTGTAAACAGACTTTTCAGATCAAGGCGGGTTCTTACTTACTCG TACGCTTTTGCGTTTTATATGTTTGGGGAAGAATTATTCAATGGCGAGATGACAAAGGAGGAGAGAGAAATAAAACAGAATCTATTTGAAGATCAGCAGC AACAGCTGGAGTCAATGGTTGAGAACTTGTCGAAGCTTCTTGAAGAGCCGTTTGACCAGTACGTTGATGATAAAATAATGGAGATACGTATGCAGATCAT CAATCTATCTGTTATGACAGATACCCGTTGTAAGAAAATGTACGAGTGCATCGAGAATGATTTATTGGGTTCCCTTCAATTGGGCACTCATAATATTGCT CCATACAAGTCAAAGGGCGTGGAGAAGGCATCAGAACTCTCCACTTGTTCGAGCACTAGAGCCAGTGATGCTAGTACGGACGTCCCACCAGATGTCATAT CAAGTGGTGGGACATCGAAACGGGACAGGCCATCAGTGTCAGGAAGTTCAAACGAAAGTGAAAAATGCTCATTGCAGAAGCGGGCAAGGAAGGAGGTGAG CGGATTCTTTGATCTAAATATGCCAGCAGACTTGATTGAAAGGAACTGA
AA sequence Show only first row Show all	>Lus10026319 pacid=23156380 polypeptide=Lus10026319 locus=Lus10026319.g ID=Lus10026319.BGIv1.0 annot-version=v1.0 MEDYGASDDENYYSDVDQEESLDGFENEDSAVPSSRCKDSTSKVITKESLFAAQTEDLRRVMELLSVREHHARTLLIYYRWDVEKLFSVLVERGKAHLFT EAGVMVDADRNNDNNQCSSSTVTCEICMEEVRANTSTRIDCGHCFCNDWQSRRIRCMAFKCNAICDEAVVRNLVGKSHPDLAEKFERFLLESYIEDNKMV KWCPSAPHCGNAIRIEEDEVCEVQCSCGLQFCFSCLSTAHSPCSCVMWELWTKKCRDESETVNWMTVHTKPCPKCHKPVEKNGGCNLVSCVCGQAFCWLC GGATGRDHTWTRIAGHSCGRYKEDAKEKTERAKRDLYRYMHYHNRYKAHKDSFKLENKLEQTIKDRVSISEQRESTIRDFSWVTNGVNRLFRSRRVLTYS YAFAFYMFGEELFNGEMTKEEREIKQNLFEDQQQQLESMVENLSKLLEEPFDQYVDDKIMEIRMQIINLSVMTDTRCKKMYECIENDLLGSLQLGTHNIA PYKSKGVEKASELSTCSSTRASDASTDVPPDVISSGGTSKRDRPSVSGSSNESEKCSLQKRARKEVSGFFDLNMPADLIERN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G16090		ATARI2, ARI2, A...	ARABIDOPSIS ARIADNE 2, ARIADNE...		Lus10026319 [exp]	0	1
AT4G35580	NAC	NTL9, CBNAC	NAC transcription factor-like ...		Lus10017353 [exp]	1.0	0.8922
AT3G48860			unknown protein		Lus10032546 [exp]	1.4	0.8920
AT5G13020		AtEML3, ACK1	EMSY-like 3, Emsy N Terminus (...		Lus10031221 [exp]	2.6	0.8665
AT1G30540			Actin-like ATPase superfamily ...		Lus10038542 [exp]	3.0	0.8789
AT3G55270		MKP1, ATMKP1	ARABIDOPSIS MITOGEN-ACTIVATED ...		Lus10003291 [exp]	5.5	0.8717
AT1G12450			SNARE associated Golgi protein...		Lus10007018 [exp]	6.0	0.8653
AT4G26980			RNI-like superfamily protein (...		Lus10032638 [exp]	11.0	0.8601
AT5G48160		OBE2	OBERON2, Protein of unknown fu...		Lus10006372 [exp]	13.0	0.8371
AT1G65430		ATARI8, ARI8	ARABIDOPSIS ARIADNE 8, ARIADNE...		Lus10020229 [exp]	14.8	0.8429
AT2G23460		ATXLG1, XLG1	extra-large G-protein 1 (.1)		Lus10019655 [exp]	15.4	0.8474

Compare expression of checked genes

Lus10026319 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.