Plant FIBer expression Database

Lus10026320 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G51010 115 / 2e-32 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10042347
[exp]
291 / 2e-101 AT3G51010 170 / 5e-54 unknown protein
Lus10041795
[exp]
268 / 1e-92 AT3G51010 175 / 5e-56 unknown protein
Lus10028346
[exp]
249 / 3e-85 AT3G51010 172 / 7e-55 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.007G018300
[exp]
112 / 8e-32 AT3G51010 94 / 6e-25 unknown protein
PFAM info
Representative CDS sequence
>Lus10026320 pacid=23156590 polypeptide=Lus10026320 locus=Lus10026320.g ID=Lus10026320.BGIv1.0 annot-version=v1.0
ATGGGATTTGGAGCTTTGAGAAGCATCGTTCGGCCGCTGGCCAGAACTCTCACGTCCGGTGCCTCAACTTCCTACTCGACATCTTTGCTGGGAAAAGCTC
CGTTTCCTCCATCCGAGTTGCGGCGATTGGATCTCATCCCTCAGGCTCCACCAGTTTCCCAGCTATTACGCCATTTTAGTTTCTTCTCGGAGTCTGGTTA
CGATAGTTTAACCGACACCAGGTTGCCAAAGCGCCGCCCCCTCGACAAACCTCGTCGGAAAAGAGCTGGATTGAGACCTTCTGGGGCATTTGCTTGGGTA
AAGTATGAGGCTGGAGAGCCTATTAAGCCCAGTAACCCTAATAAAGGAAGTGTGAAGCAAAGGAATGAGAAGAAACGTAGAATGTTGCACCGAGAATTCG
TAAAGTCCGAGGCGAAGAAGAGGAAAGCGCTGTTGCAGGCGGCTAATAGGAGGAAAATGGCAGCGAGAGTGGACCGTAAAATGGCTGCCGTGGCTAGGGA
TAGAGCATGGGCAGAAAGACTAGCTGAACTGCAACGGCTTGAAGAGGAAAAGAAAAATTCATCAGCTTAA
AA sequence
>Lus10026320 pacid=23156590 polypeptide=Lus10026320 locus=Lus10026320.g ID=Lus10026320.BGIv1.0 annot-version=v1.0
MGFGALRSIVRPLARTLTSGASTSYSTSLLGKAPFPPSELRRLDLIPQAPPVSQLLRHFSFFSESGYDSLTDTRLPKRRPLDKPRRKRAGLRPSGAFAWV
KYEAGEPIKPSNPNKGSVKQRNEKKRRMLHREFVKSEAKKRKALLQAANRRKMAARVDRKMAAVARDRAWAERLAELQRLEEEKKNSSA

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT3G51010 unknown protein Lus10026320
[exp]
0 1
AT1G02870 unknown protein Lus10001459
[exp]
1.4 0.8902
AT5G64670 Ribosomal protein L18e/L15 sup... Lus10032390
[exp]
3.7 0.8632
AT4G39880 Ribosomal protein L23/L15e fam... Lus10024048
[exp]
6.5 0.8202
AT5G39600 unknown protein Lus10033166
[exp]
7.5 0.7951
AT2G37270 ATRPS5B ribosomal protein 5B (.1.2) Lus10004113
[exp]
12.6 0.8392
AT5G13780 Acyl-CoA N-acyltransferases (N... Lus10019745
[exp]
15.3 0.7959
AT5G60030 unknown protein Lus10023334
[exp]
18.0 0.8028
AT3G05590 RPL18 ribosomal protein L18 (.1) Lus10031485
[exp]
18.3 0.8330
AT5G67630 P-loop containing nucleoside t... Lus10019267
[exp]
19.2 0.8179
AT3G49910 Translation protein SH3-like f... Lus10011540
[exp]
19.6 0.8227

Lus10026320 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.